Pseudomonas sp. ATCC 13867: H681_16190
Help
Entry
H681_16190 CDS
T02524
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pdr
Pseudomonas sp. ATCC 13867
Pathway
pdr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H681_16190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdr03400
]
H681_16190
Enzymes [BR:
pdr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H681_16190
DNA repair and recombination proteins [BR:
pdr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H681_16190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AroM
H_T_assoc
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AGI25106
UniProt:
M4X0P7
LinkDB
All DBs
Position
3650930..3654394
Genome browser
AA seq
1154 aa
AA seq
DB search
MSVLRIPSLPTAAGKQSWGNLPGAALSLAIAEASASANRFTLLLTADSQSAERLEQELSF
FAPDLPVLQLPDWETLPYDVFSPHQDIISQRVATLYQLPGLRRGVLVVPITTALHRLAPA
KFLLGSSLVLDVGQKLDVEQMRSRFEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSELPY
RIDLFDDEIETLRTFDPETQRSIDKVESIRLLPAREFPLRKEAVTGFRGRFRERFDVDYR
RCPIYQDLASGLTPAGIEYYIPLFFEEGETSTLFDYLPQDTQVFSLPGIESAAEQFWTDV
RSRYEDRRYDPERPLLPPADVFLPVEDCFARLKNWPRVVVSPEPIETGVGRERFPAEALP
ELAIEAKATEPLARLRQFIERFDGRILFTAESAGRREVLLELLARLKLRPVEVEGWPGFL
AHQDRLAITIAPMDEGLLLDADKGQPGIALVAESPLFGQRVMQRRRREKTRDGGENVIKN
LTELREGAPVVHIDHGVGRYMGLITLEIDGQNAEFLALEYADEAKLYVPVANLHLIARYT
GSDDALAPLHKLGSETWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFKDPQVDYATF
SAGFPFEETPDQQTAIEAVVADMLADKPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVA
VLVPTTLLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVEGAVAQLAEGKVDIVIGTHKL
LQDDVKFKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDL
SIIATPPARRLSVRTFVMEEQKSVIKEALLRELLRGGQVYFLHNEVKTIEKCARDLAELV
PEARIGIGHGQMNERDLERVMSDFYHKRFNVLVASTIIETGIDVPSANTILIERADKFGL
AQLHQLRGRVGRSHHQAYAYLLTPPRKQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIR
GAGELLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPDINLRVPALIP
EDYLPDVHGRLILYKRIANAADEDGLRELQVEMIDRFGLLPEPAKNLMRLTLLKLQAEKL
GILKVDAGPQGGRVEFAADTCVDPLVLIKMIQGQPNRYKFEGATLFKFQVPMERPEERFN
TLEALLERLTPQTH
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcgcattccttcgctgccgactgctgccggcaagcaatcctggggcaac
ctgccgggcgccgccctgagccttgccattgccgaagcctcggcgtccgccaaccgtttc
accctgttgctgaccgccgacagccagagcgccgagcgcctggagcaggagctgagcttc
ttcgcgccggacctgccggtgctgcagctgccggactgggaaaccctgccctacgacgtg
ttctcgccgcaccaggacatcatttcccagcgcgtcgccaccctttaccagttgcccgga
ctgcgccgcggcgtgctggtggtgccgatcaccaccgccctgcaccgcctggcgccggcc
aagttcctgctcggcagcagcctggtgctggacgtcggccagaaactcgacgtcgaacag
atgcgcagccgcttcgaggccgccggctaccgctgcgtggacaccgtctacgagcacggc
gagttcgccgtgcgcggtgcgctgatcgacctgttcccgatgggcagcgagctgccctac
cgcatcgatctgttcgatgacgagatcgagacgctgcgcaccttcgacccggaaacccag
cgctccatcgacaaggtggagagcatccgcctgctgccggcgcgcgagttcccgctgcgc
aaggaagcggtgaccggcttccgtggccgcttccgcgagcgcttcgacgtcgactaccgc
cgctgcccgatctaccaggatctggccagcggcctgacaccggcgggcatcgagtactac
atcccgctgttcttcgaagagggcgagacgtcgacgctgttcgactacctgccgcaggac
actcaggtgttctccctgccaggcatcgagagcgccgccgagcagttctggaccgacgtg
cgcagccgctacgaagaccgccgctacgacccggaacgcccgctgctaccgcccgctgac
gtcttcctgccggtggaagactgcttcgcccgcctgaagaactggccgcgcgtggtggtc
agcccggaaccgatcgagaccggcgtcggccgcgagcgtttccccgccgaagcgctaccg
gaactggcgattgaagcgaaagccacggaaccgctggcacgcctgcgccagttcatcgag
cggttcgacgggcgcatcctgttcaccgccgaatccgccggccgccgcgaagtgctgctg
gaactgctggcgcggctgaagctgcgcccggtggaagtcgagggctggccgggcttcctg
gcgcaccaggaccgcctggcaatcaccatcgcgccgatggacgaaggcctgctgctggac
gccgacaagggccagccgggcatcgccctggtggccgaaagcccgctgttcggccagcgc
gtcatgcagcgccggcgccgcgagaagacccgcgacggtggcgagaacgtcatcaagaac
ctcaccgagctgcgcgaaggggcgccggtggtgcacatcgaccacggcgtcggccgctac
atgggcctgatcaccctggagatcgacggccagaacgccgaattcctcgccctggaatac
gccgacgaggccaagctctacgtgcccgtggccaatctgcacctgatcgctcgctacacc
ggcagcgacgacgccctggcgccgctgcacaagctgggctcggaaacctggcagaaggcc
aagcgcaaggccgccgaacaggtccgcgacgtcgccgccgagctactggacatctacgcc
cgtcgcgccgcgcgcaagggctacgcgttcaaggacccgcaggtcgactacgccaccttc
tccgccggcttccccttcgaggaaaccccggaccagcagaccgccatcgaagccgtggtg
gccgacatgctcgccgacaagccgatggaccgcctggtctgcggcgacgtgggcttcggc
aagaccgaagtggccatgcgcgcggccttcgtcgcggtgcacagcggcaagcaggtcgcc
gtgctggtgcccaccaccctcctcgcccagcagcactacaacagcttccgcgaccgcttc
gccgactggccggtgagcgtcgaggtgatgagccgcttcaagtccgccaaggaagtcgaa
ggcgccgtggcgcaactggccgaaggcaaggtcgacatcgtcatcggcacccacaagctg
ctgcaggacgatgtgaagttcaagaacctcggcctggtcatcatcgacgaagaacaccgt
ttcggcgtacgccagaaggagcagctcaaggccctgcgcagcgaggtggacatcctcacc
ctcaccgccacgccgatcccgcgcacgctcaacatggcggtggccggcatgcgcgacctg
tcgatcatcgccacgccgccggcgcgacgtctctccgtgcgcaccttcgtcatggaagaa
cagaagtcggtgatcaaggaagccctgctgcgcgaactgctgcgcggcggccaggtgtac
ttcctgcacaacgaggtgaagaccatcgagaagtgcgcccgcgacctggccgagctggtc
ccggaagcgcgcatcggcatcggccacgggcagatgaacgagcgcgacctggagcgggtg
atgagcgacttctaccacaagcgcttcaacgtgctggtggcctcgaccatcatcgagacc
ggcatcgacgtgcccagcgccaacaccatcctcatcgagcgcgccgacaagttcggcctg
gcccagctgcaccagctgcgcggccgcgtcggccgcagccaccaccaggcctatgcctac
ctgctcaccccgccgcgcaagcagatgaccccggacgccgagaagcgcctggaagccatc
gccaacgcccaggacctcggcgccggcttcgtgctggccacccacgacctggagatccgc
ggcgccggcgaactgctcggcgacggccaaagcgggcagatccaggcggtgggcttcacc
ctctacatggagatgctcgaacgcgcggtgaaggccatccgcaagggcgagcaaccgaac
ctggaacagccgctgggtggcggcccggacatcaacctgcgggtgccggcgctgatcccc
gaggactacctgccggacgtccacggccgcctgatcctctacaagcgcatcgccaacgct
gccgacgaggacggcctgcgcgagctgcaggtggaaatgatcgaccgcttcggcctgctg
ccggagccggcgaaaaacctgatgcgcctgacgcttctcaaactgcaggcggaaaaactc
ggcatcttgaaggtagatgccgggccgcagggaggccgggtagaatttgccgccgatacc
tgcgtcgacccgctggtgctgatcaagatgatccagggccagcccaatcgctacaaattc
gaaggggccaccctcttcaagttccaggtgccgatggagcgcccggaagaacggttcaac
acgctggaagcgctactcgagcgcctcacgccacagactcactaa
DBGET
integrated database retrieval system
