Pseudomonas sp. ATCC 13867: H681_18200
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Entry
H681_18200 CDS
T02524
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pdr
Pseudomonas sp. ATCC 13867
Brite
KEGG Orthology (KO) [BR:
pdr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdr03019
]
H681_18200
Enzymes [BR:
pdr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H681_18200
Messenger RNA biogenesis [BR:
pdr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H681_18200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
NACHT
ABC_tran
T2SSE
AAA_23
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AGI25507
UniProt:
M4X389
LinkDB
All DBs
Position
complement(4081919..4085974)
Genome browser
AA seq
1351 aa
AA seq
DB search
MTTDSTPTPEQLLQRMDHAMIRDRHRLRRQLHELRKHPDEAKLVQWAERFQASCAKAEAR
RASIPSIRYDDSLPIAAKRDEIKAALMKSQVVVIAGETGSGKTTQLPKICLELGRGTHGL
IGHTQPRRLAARSVATRVAEEIGTPLGSLVGYQVRFEDQSDDSTLIKLMTDGILLAETQH
DRYLERYDTIIVDEAHERSLNIDFLLGFLKTLLHRRPDLKLIITSATIDLERFSKHFGDA
PIVEVSGRTYPVETWYRPLAAEVDEDGEALFDDLSVDQGILRALDEIAAHEREIGKRPGD
VLVFLPGEREIRDAADMLRKANLRHTEVLPLYARLTPAEQQKIFAPMPGRKIVLATNVAE
TSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLY
SEEDFNGRPAFTDPEILRTNLAAVILQMLHLRLGDIEAFPFIEPPDGKAINDGFTLLQEL
SAVNREGQLTPLGRQLARLPIDPRLGRMLLEAAQLGSLPEVLTVASALSVQDPRERPMDR
QQAADQAHAQWKDPDSDFAALINLWRGFEEQRQALGSNPLRNWCRKNFLNYLRLREWRDA
HRQLTLICRELQLPFGSKASGRSELAREQPHTAKPQDNKAAGKDSKSVREQARSYKGGEP
DAKQRDIDYAAVHKAILSGLLSQIGQKAEEGDYLGARQRRFWIHPSSVIGRKKPQWIMAA
ELVETTKLFARMVAKIEPDWLEPLAGHLVKKNYLEPHWEKRRGQVVAYEQVTLYGLIIIG
RRPVHYGPIDAPVSREMFIREALVRGEINSRAKCLSANRQLLEKLDELEAKARRRDILAD
EETLFAYYDERLPADIYQSASFEKWYEREHKQQPDLLIMREEDVLARDASEVTAGLYPDR
LRLGDLQLPLTYHFEPGHVRDGVTVRVPAPLLPQLPAERLEWLVPGLLEAKCIELVRSLP
KAIRKNFVPVPDFVRAALGKMVFAEGALSESLGRELQRMTGSRVPEEAWAEAETQVESHL
RMNIEVVDARGKFLGEGRDLAELTARFAEASQAALAIPQADKPQKAVEAKGFGEVAERVQ
QKVAGLSMTVYPALVEEAGVVKENRFPTQAEADYQHRRALQRLLLQQLAEPAKFLRGKLP
GQTDMGLLYRELGRVESLVEDILLASLDSAILDGESSLPRDGAGLASLAEKKRGAWTEHA
ERIARLTLEILKLWHGLQKRFKGKVDLAMTVPLNDVKGQLAKLVYPGFVRDTPLEWLKEY
PRYLKAVEQRLDKVAGQVQRDRVWSGEMAGYWEQYAARLAKHAQEGKRDPELVMYRWMLE
EYRVSLFAQQLGTKVPVSDKRLSKQWSQVEA
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgaccacagacagtacgccgacccccgaacagctcctgcagcgcatggatcacgcgatg
atccgcgaccgccaccgcctgcgccggcagctccatgaactgcgcaagcaccccgacgaa
gccaagctcgtccagtgggccgagcgcttccaagcctcctgcgccaaggccgaggcgcgc
cgcgcgagcatcccgtcgatccgttacgacgacagcctgccgattgccgccaagcgcgac
gagatcaaggccgcgctgatgaagagccaggtggtggtgatcgccggcgagaccggttcg
ggcaagaccacccagctgccgaagatctgcctggagctgggccgtggcacccacggcctg
atcggccacacccagccgcgccgcttggccgcgcgcagcgtggccacccgcgtcgccgag
gagatcggcacgccgctgggttcactggtcggctaccaggtgcgtttcgaggaccagagc
gacgacagcacgctgatcaagctgatgaccgacggcatcctgctggccgagacccagcat
gaccgttacctcgagcgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctg
aacatcgacttcctgctcggcttcctgaagaccctgctgcaccgccggccggacctgaag
ctgatcatcacttcggcgaccatcgacctggaacgcttctccaaacactttggcgatgcg
cccatcgtcgaggtctcggggcgcacctacccggtggaaacctggtaccgcccgctggcg
gcggaagtggacgaggatggcgaagcgctgttcgacgacctctccgtggaccagggcatc
ctccgcgcgctggacgagatcgccgcccacgagcgcgaaatcggcaagcgccccggcgac
gtgctggtgttcctccctggtgagcgcgaaatccgtgatgccgccgacatgctgcgcaag
gccaacctgcgtcacacggaggtgctgccgctgtatgcgcggctgacgccggccgaacag
cagaaaatcttcgcgcccatgccggggcgcaagatcgtgctcgccaccaacgtcgcggaa
acctcgctgaccgtaccgggcatccgctacgtgatcgacagcggcaccgcgcggatcagc
cgctacagctaccgcgccaaggtccagcgcctgcccatcgaggccgtctcgcaagccagc
gccaaccagcgcaagggccgttgcggacgggtcgagcctggcatctgcgtgcgtctgtac
agcgaggaagacttcaacggccgtccggccttcaccgatccggagatcctgcgcaccaac
ctggcggcggtgatcctgcagatgctgcacctgcgcctgggcgacatcgaggccttcccc
ttcatcgagccgccggacggcaaggcgatcaatgacggtttcaccctgctgcaggaactc
tcggcggtgaaccgcgagggccagctgacgccgctgggccgccagctggcgcgcctgccc
atcgacccgcggctgggccgcatgctgctggaagcggcgcaactgggcagcctgccggaa
gtgctcaccgtggccagcgcactgtccgtgcaggacccgcgcgagcggccgatggatcgc
cagcaggccgccgaccaggcccacgctcagtggaaggacccggattcggacttcgccgca
ctgattaacctctggcgcggcttcgaggagcagcgccaggcgctgggttccaacccgctg
cgcaattggtgccggaagaacttcctgaactatctgcgtctgcgcgagtggcgtgatgcg
caccgccagctgacgctgatctgccgtgaattgcagctgcccttcggctccaaggcttct
ggtaggagcgagcttgctcgcgaacagccccacaccgcgaaaccccaggacaacaaagcc
gccggcaaggactcgaagagcgttcgcgagcaagctcgctcctacaaaggtggcgagccg
gatgcgaagcagcgcgacatcgactacgccgccgtgcacaaggcaatcctctccggcctg
ctgagccagatcggccagaaggcggaggagggcgactacctcggcgcgcgccagcggcgt
ttctggattcacccttccagcgtgatcggccgcaagaagccgcagtggatcatggccgcc
gagttggtggagaccaccaagctgttcgcccgcatggtcgccaagatcgagccggactgg
ctggagccgctggccgggcacctggtgaagaagaactacctggagccgcactgggaaaaa
cgccggggccaggtggtggcctacgagcaggtcacgctctacggcctgatcatcatcggc
cgccgccccgtgcactacggccccatcgatgcgccggtatcccgcgagatgttcatccgc
gaggcgctggtgcgtggcgagatcaacagccgcgccaagtgcctgtcggccaaccgccag
ttgctggagaagctcgacgagctggaagccaaggcgcgccggcgcgacatcctcgccgac
gaggaaaccctcttcgcctactacgacgagcgcctgccggcggacatctaccagtccgcc
agcttcgagaagtggtacgagcgcgagcacaagcagcagccggacctgctgatcatgcgc
gaggaggacgtcctcgcccgtgacgccagcgaagtcactgccggcctctacccggaccgc
ctgcgcctgggtgacctgcaactgccgctcacctatcacttcgagcccggccacgtgcgt
gatggcgtgaccgtgcgcgtaccggcgccgctgctgccgcagctgcccgccgaacgcctg
gagtggctggtgccaggcctgctggaggccaagtgcatcgagctggtgcgcagcctgccc
aaggccatccgcaagaacttcgtgccggtgccggacttcgtccgcgccgcactgggcaag
atggtcttcgccgaaggcgcgctgtccgaatccctcggccgcgagctgcagcgcatgact
ggcagccgcgtgcccgaagaggcctgggcggaggccgaaacccaggtggaaagccacctg
cggatgaacatcgaggtggtcgacgcccgtggcaagttcctcggcgaaggccgtgatctg
gccgagctcaccgcacgcttcgccgaagccagccaggctgcgctggcgatcccgcaggcg
gacaagccgcagaaagcggtggaagccaagggctttggcgaagtggcggagagggttcag
cagaaggtcgccgggctgtcgatgacggtctacccggcgctggtggaagaggccggcgtg
gtgaaggaaaaccgcttcccgacccaggccgaggccgactaccagcaccgccgcgccctg
cagcgcctgctgctgcaacagttggccgagccggccaagttcctgcgcggcaagctgcca
gggcagaccgacatgggcctgctctaccgcgagctgggccgggtcgagtcgctggtggag
gacatcctgctggccagcctggacagcgccattctcgacggtgaaagcagcctgccgcgc
gatggcgccgggctcgcctcactggccgagaagaagcgcggcgcatggaccgagcacgcc
gagcgcatcgcccgcctgaccctggaaatcctcaagctctggcacggcctgcagaagcgc
ttcaagggcaaggtcgacctggccatgaccgtgccgctcaacgacgtgaaggggcaactg
gccaagctggtctaccccggcttcgtccgtgacacgccgctggaatggctgaaggaatac
ccgcgctacctgaaggcggtcgagcagcgcctggacaaggtcgccggccaggtccagcgc
gaccgtgtctggagcggcgagatggccggctactgggaacagtatgcggcgcgcctggcc
aagcacgcccaggaaggcaagcgcgacccggaactggtgatgtaccgctggatgctggag
gaataccgcgtctcgctgttcgcccagcaactggggacgaaggtgccggtgtcggacaag
cgcctgtcgaagcagtggagccaggtcgaggcctga
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integrated database retrieval system
