Pseudomonas sp. ATCC 13867: H681_21040
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Entry
H681_21040 CDS
T02524
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pdr
Pseudomonas sp. ATCC 13867
Pathway
pdr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H681_21040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdr03019
]
H681_21040
03016 Transfer RNA biogenesis [BR:
pdr03016
]
H681_21040
Enzymes [BR:
pdr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
H681_21040
Messenger RNA biogenesis [BR:
pdr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
H681_21040
Transfer RNA biogenesis [BR:
pdr03016
]
Prokaryotic type
tRNA degradation factors
H681_21040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_2
KH_2
Motif
Other DBs
NCBI-ProteinID:
AGI26075
UniProt:
M4XLD8
LinkDB
All DBs
Position
complement(4711404..4713509)
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AA seq
701 aa
AA seq
DB search
MNPVTKKFQFGQSTVTLETGRIARQATGAVLVTMDDVTVLCTVVGAKQADPSKSFFPLSV
HYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVSTN
KKSDPDIAAMIGTSAALAISGIPFAGPIGAARVGFHPEIGYILNPTYEQQQSSSLDMVVA
GTSDAVLMVESEADELTEDQMLGAVLFAHEEFQAVIRAVAELATEAGKPSWNWTAPVENT
ALVNTIKAEFGAAISEAYTVTVKQDRYAALDALREQIVAKFAGEGEGQFSAGEVKDVFGL
LEYRTVRENIVNGKPRIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGERKDPFMLHYNFPPFSVGECGRMGSAGRREIGHGRLARRSVAAMLPTQD
EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGDKFAILT
DILGDEDHLGDMDFKVAGTDKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ
IIAAPRAELSENAPTMIQMKIDTDKIRDVIGKGGATIRSICEETKASIDIEDDGSVKIYG
ETKEAAEAAKQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDKRI
DKVTDVLQEGQEVKVLVLDVDNRGRIKLSIKDVAAAEASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaaccaagaaattccagttcggtcagtcgaccgtaaccctcgagactggc
cgcatcgcccgccaggccaccggtgccgtcctggtcaccatggacgacgtcaccgtgctc
tgcaccgtcgtcggcgccaagcaggccgacccgagcaagagcttcttcccgctctccgtg
cactaccaggagaagacctacgcagccggccgcatccccggtggtttcttcaagcgtgaa
ggccgtccttccgagaaggaaaccctgacctcgcgcctgatcgaccgtccgatccgcccg
ctgttcccggaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtttccaccaac
aagaagtccgatccggacatcgctgccatgatcggcacctccgccgccctggcgatctcc
ggcattccgttcgccggcccgatcggcgctgcccgcgttggcttccacccggaaattggc
tacatcctcaacccgacctacgagcagcagcagagctccagcctcgacatggtcgtggcc
ggtacttccgatgccgtgttgatggttgaatccgaagccgacgagctgaccgaagaccag
atgctgggcgccgttctgttcgcccacgaagaattccaggcggtcatccgcgccgttgcc
gaactggcaaccgaagccggtaagccgagttggaactggaccgcgccggtcgagaacacc
gccctggtcaacaccatcaaggccgagttcggtgctgccatctccgaggcctacaccgtt
accgtcaagcaggaccgttacgcggccctggacgccctgcgcgagcagatcgtcgccaag
ttcgccggcgaaggcgaaggccagttctccgcgggtgaagtcaaagacgtcttcggcctg
ctggaataccgcaccgttcgcgagaacatcgtcaacggcaaaccgcgtatcgacggccgc
gacacccgcaccgttcgtccgctgcgtatcgaagtcggcgtactgggcaagacccacggt
tcggcgctgttcacccgtggcgaaacccaggccctggtcgttgccaccctcggcaccgcc
cgtgacgcccaactgctcgacaccctcgaaggcgagcgcaaagaccccttcatgctgcac
tacaacttcccgccgttctcggtgggcgagtgtggccgcatgggcagcgctggccgtcgt
gaaatcggccacggccgtctggcccgtcgcagcgtcgctgccatgctgccgacccaggac
gagttcccctacaccatccgtgtggtttccgagatcaccgaatccaatggctccagttcc
atggcgtcggtctgtggtgcttccctggcgctgatggatgccggtgttccggtcaaggcg
ccggttgccggtatcgccatgggtctggtgaaggaaggtgacaagttcgccatcctgacc
gacatcctgggtgatgaagaccacctgggcgacatggacttcaaggttgccggtaccgac
aagggtgttaccgccctgcagatggacatcaagatcaacggcatcaccgaagagatcatg
gagatcgccctgggccaggccctggaagctcgcctgaacatcctcggccagatgaaccag
atcatcgccgctccgcgcgccgagctgtcggaaaacgctccgaccatgatccagatgaag
atcgacaccgacaagatccgcgacgtcatcggcaagggcggcgccaccattcgcagcatc
tgcgaagagaccaaggcctcgatcgacatcgaggacgatggcagcgtgaagatctacggc
gaaaccaaggaagctgccgaggccgccaagcagcgcgtcctgggtatcaccgcggaagcc
gagatcggcaagatctacgtcggcaaggtcgagcgcatcgtcgacttcggcgccttcgtc
aacatcctgccgggcaaggacggtctggtgcacatctcgcagatcagcgacaagcgcatc
gacaaggtcaccgacgttctgcaggaaggccaggaagtcaaagtcctggtcctcgacgtg
gacaaccgtggccgcatcaagctgtccatcaaggacgtagccgctgctgaagcctccggc
gtgtaa
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