Pseudomonas sp. ATCC 13867: H681_22795
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Entry
H681_22795 CDS
T02524
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pdr
Pseudomonas sp. ATCC 13867
Pathway
pdr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H681_22795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdr03019
]
H681_22795
Enzymes [BR:
pdr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H681_22795
Messenger RNA biogenesis [BR:
pdr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H681_22795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_25
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGI26426
LinkDB
All DBs
Position
5109981..5111999
Genome browser
AA seq
672 aa
AA seq
DB search
MSFSSLGLSEALAGAVEAAGYARPTPVQERAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ERLFPEGHPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLKSACIFGGVGMN
PQVQAMSKGVDVLVACPGRLLDLIGQGSVDLSRVEILVLDEADRMLDMGFIHDVKKVLAK
LPAKRQNLLFSATFSKDIIDLTNKLLHNPERIEVTPPNTTVERIEQRVFRIPAVQKRVLL
AHLVTVGAWEQVLVFTRTKHGANRLAEYLSKHGLPAAAIHGNKSQNARTKALADFKANDV
RILVATDIAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEDKL
LKAIERLTKQRIPDGDMQGFDPDAVLPEVQQPEPKEAPQRQPRKDKAKRGERKERTRDKP
QQPQAEEQHNAAPAAVEAAEGDKPAGKRRRRGGRGKKKGDGQGGDAQPNANAQPRQQSQG
RQQQQPKQQARAPKVDPDRDPEEFLDDDFDNFGNRADYVSPFPDKDQPRGQRRRSGQGQG
QGQSQGQGQQQRSRGQGGGQGQGQSQNRGQGQGQGQGKAAKKPGGARGQGQGGSQGKQGQ
RKRGGKAPASRMNDAPLREPSEYGAAKPTRQPVVINKRDLLRTDRFPTAEQLEELEPRRK
TERPALLTRNRE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtccttttcctccctcggtctctccgaggccctggctggcgccgttgaagccgccggc
tacgcgcgccccacccccgtccaggaacgcgccatccccgccgtgctccagggccgcgac
ctgatggttgccgcccagaccggcaccggcaagaccggcggcttcgccctcccggtgctc
gagcgcctgtttcccgaaggccaccccgaccgcgaacaccgccacggcccgcgccaggcg
cgcgtgctggtactgaccccgactcgcgaactggccgcccaggtgcatgacagcttcaag
gtctacgcccgcgacctgcccctgaaaagcgcctgcatcttcggcggcgtcggcatgaat
ccccaggtccaggccatgtccaagggcgtcgatgtcctggtcgcctgccccggccgcctg
ctcgatctgatcggtcagggcagcgtcgacctgtcccgcgtggaaatcctcgtcctcgac
gaagccgaccgcatgctcgacatgggcttcatccacgacgtcaagaaggtcctcgccaag
ctgccggccaagcgccagaacctgctgttctcggcgaccttctcgaaagacatcatcgac
ctcaccaacaagctcctgcacaacccggagcgcatcgaggtcaccccgccgaacaccacc
gtcgaacgcatcgaacagcgcgtgttccgcatccccgccgtacagaagcgcgtcctgctg
gcgcacctggtgaccgtgggcgcctgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctcgccgagtacctctccaagcacggcctgccggccgccgcgatccac
ggcaacaagagccagaacgcgcgcaccaaggccctggccgacttcaaggccaacgacgtg
cgcatcctggtcgccaccgacatcgccgcccgcggcctggacatcgaccagttgccccac
gtggtcaactatgaactgcccaacgtcgaggaagactacgtccaccgcatcggtcgtacc
ggccgcgccgggcgtagcggtgaagccatctcgctggtggctccggacgaggacaagctg
ctcaaggccatcgaacgcctgaccaagcagcgcatccccgacggcgacatgcagggcttc
gaccctgacgccgtgctgccggaagtccagcagcccgagccgaaggaggcgccgcagcgc
cagccgcgcaaggacaaggccaagcggggcgagcgcaaggagcgcaccagggacaaaccc
cagcagccgcaggccgaagagcaacacaacgccgctcctgccgcagtcgaagccgccgaa
ggcgacaagccggccggcaagcgccgccgccgtggcggccggggcaagaagaaaggtgat
ggccagggcggcgatgcccagcccaatgccaacgcccaaccgcgccaacagagccagggc
cgccagcagcaacagcccaagcagcaggcgcgcgcaccgaaggtcgatccggatcgcgat
ccggaagagttcctcgacgacgatttcgacaacttcggcaatcgcgccgactacgtcagc
ccgttcccggacaaggaccaaccgcgcggccagcgtcgccgtagcggccaaggccaaggc
caaggacagagccaggggcaaggccaacagcagcgcagccgtggtcagggcggcggtcag
ggtcagggccaaagccagaaccgtggccaggggcaggggcaaggccagggcaaggctgcc
aagaagcccggcggcgctcgcggccagggccagggtggcagccagggcaagcagggccag
cgcaagcgcggcggcaaggcaccggcctcgcgcatgaacgatgccccgctgcgcgagccg
agcgaatacggcgccgccaagccgacccgtcagccggtggtgatcaacaagcgcgacctg
ctccgcaccgaccgcttccctaccgccgagcagttggaagaactggaaccgcgccgcaag
accgagcgtccggcgctgctgacccgcaatcgcgagtga
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