Photobacterium damselae subsp. damselae: CAY62_00465
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Entry
CAY62_00465 CDS
T04927
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pds
Photobacterium damselae subsp. damselae
Pathway
pds03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pds00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CAY62_00465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pds03021
]
CAY62_00465
03400 DNA repair and recombination proteins [BR:
pds03400
]
CAY62_00465
Enzymes [BR:
pds01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CAY62_00465
Transcription machinery [BR:
pds03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CAY62_00465
DNA repair and recombination proteins [BR:
pds03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CAY62_00465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ARR48203
LinkDB
All DBs
Position
I:96040..100257
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLMDMPLRDIERVLYFESYVVIEPGMTNLERSQLLSEEQYLDALEEWGDEFDAKM
GAEAVKALLANMDLNAEIELMREELEETNSETKRKKLTKRLKLVEAFVQSGNNPEWMILS
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHLPLTLEAQLEA
RALMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDMINAKGEGMYLAGSAEAEKAYRTG
SAALHARVKVRITEYKKDEQGNLTPETKLVDTTVGRAMLWTIVPKGLPYSLVNTEALGKK
QISKLLNTCYRELGMKETVVFADQIMYTGFEYAALSGVSVGIDDMVVPEAKYTKIAEAEA
EVAEIQEQFQSGLVTAGERYNKVIDIWATANEQVAKAMMDNLSFETVINRDGEEEQQKSF
NSVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDVVITADDCGTHDGISMMPLIEGGDVKEALRDRV
LGRVVVEDVLKPGTEEVLIPRNTLIDEKWCDIIDANSVDLVKVRSVVTCENDFGCCKLCY
GRDLARGHLVNTGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASAAAAENSIQVKNNGSVK
LQNAKFVINGEGKLVITSRASEMTIIDEFGRTKENYKLPYGSHLTKNDGDEVKAGEVIAN
WDPHTMPIITEVAGRIQFVDLIDGVTVSRQTDELTGLSMITVLDAAERTGAGKDMRPTVK
LVDENGNDVMISGTEIPAQYFLPGKAIIQLDDGALVGIGDTLARIPQASGGTKDITGGLP
RVADLFEARKPKEPAILAEITGTVSFGKETKGKRRLILTPAEGQPYEEMIPKWRQLNVFE
GDKVEKGDVIADGPESPHDILRLRGVFAVAEYIVNEVQEVYRLQGVKINDKHIETIIRQM
LRKVTITAPGDSEFLEGEQVEYSRVTIANRQLEAEGKTPAAYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVSGKRDELRGLKENVIVGRLIPAGTGFAHHQQRQRSRDAEFEPV
APQIDAEQASQDLAALLNAGLSDED
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaaagcacaacataagaccgaagaatttgatgcgatc
aaaatcggtctagcttcacctgacatgatccgttcatggtcttttggtgaagttaaaaag
ccagaaaccattaactaccgtacctttaagcctgagcgtgacggtcttttctgtgcacgt
atctttggcccggttaaagattacgagtgtctttgtggcaaatacaagcgcctaaagcac
cgtggtgttatctgtgaaaaatgtggtgttgaagttactcagaccaaagtacgtcgtgag
cgtatgggtcacattgagcttgcttcacctgttgcccacatctggttcctaaaatcgcta
ccatctcgtatcggtttgctaatggacatgccactacgtgatatcgagcgtgtactttac
ttcgaatcttacgtagtaatcgaaccaggtatgaccaatcttgagcgtagccagctgctt
tctgaagagcagtacctagatgcgcttgaagagtggggcgacgaatttgacgctaagatg
ggtgcagaagcggttaaagcactattggccaatatggaccttaatgctgaaatcgaactt
atgcgcgaagagttagaagaaactaactctgaaactaagcgtaagaagctaactaagcgt
ttgaagctagttgaagcatttgtacagtcaggcaacaaccctgagtggatgatcctatct
gtactgccagttcttccaccggatcttcgtccgttggtaccgctagatggtggccgtttc
gcgacttcagatcttaacgatctataccgtcgtgtaatcaaccgtaacaaccgtctaaag
cgtctgcttgacttagctgctcctgatatcatcgtacgtaacgaaaagcgtatgctgcag
gagtctgtagatgcattgcttgataacggtcgtcgtggtcgcgcaatcacaggttctaac
aagcgtcctctgaaatctttggctgatatgatcaaaggtaagcagggtcgtttccgtcag
aacttgcttggtaagcgtgtagactactcaggtcgttctgttatcacagtaggtccatac
ctgcgtctgcaccagtgtggtcttcctaagaagatggcacttgagctatttaaaccattt
atctacggtaagctagagactcgtggtcttgcgactacaatcaaagctgctaagaagatg
gttgagcgtgaagaagcagttgtttgggatatcctagacgaagtaattcgcgaacaccca
gtaatgctaaaccgtgcgccgacactgcaccgtcttggtattcaggcatttgaaccgatc
ctaatcgaaggtaaagcgattcagcttcacccactagtgtgtgcggcatacaacgccgac
ttcgatggtgaccagatggcggttcacttaccattgactctagaagcacagctagaagca
cgtgctcttatgatgtctactaacaacatcctatcgcctgcgtcaggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctttactacatgacgcgtgacatgatcaacgcg
aagggtgaaggcatgtacctagctggttctgctgaagctgaaaaagcttaccgtactggt
tctgcagctctacacgcacgtgtaaaagttcgcattactgagtacaagaaggacgagcaa
ggtaacctaactccagaaactaagctagttgatacgactgttggtcgtgcaatgctatgg
actatcgtaccgaaaggtctgccatacagcctagtgaacactgaagctttaggtaagaag
caaatttctaaactgcttaacacttgttaccgtgaattgggtatgaaagagactgtagtc
tttgctgaccaaatcatgtacacaggttttgaatatgcggcactttctggtgtttctgtt
ggtatcgacgatatggttgtaccagaagcgaaatacactaagatcgcagaagcagaagca
gaagttgcagagatccaagaacagttccagtctggtcttgttactgctggcgaacgttac
aacaaagttatcgatatctgggcaacagcgaacgaacaagttgctaaagctatgatggat
aacctgtctttcgaaactgttattaaccgtgacggtgaagaagaacagcagaagtcgttc
aacagcgtatacatgatggctgactcaggtgctcgtggttctgccgctcagattcgtcag
cttgctggtatgcgtggtctgatggctaagccggatggctcaatcatcgaaacgccgatc
actgcgaacttccgtgaaggtctaaacgtacttcagtactttatctctactcacggtgct
cgtaagggtcttgcggataccgcacttaagactgcgaactcaggttacctaactcgtcgt
ctagtagacgtagcacaagacgttgtaattacagcggatgactgtggtactcacgatggt
atctctatgatgcctctgatcgaaggtggtgatgttaaagaagcactacgtgaccgtgtt
ctaggtcgtgtggttgttgaagacgttctaaaaccaggtacagaagaagttcttatccct
cgtaacaccctaatcgatgagaagtggtgtgacattatcgatgcgaactctgttgaccta
gttaaagtacgttctgtggttacctgtgagaacgacttcggttgttgtaagctatgttac
ggtcgtgacctagctcgtggtcacctagtgaacactggtgaagccgttggtgttgttgca
gcacagtcaatcggtgaaccgggtacacagcttaccatgcgtacgttccacatcggtggt
gcggcatcggcagctgctgctgaaaacagcatccaggttaagaacaacggttctgtgaaa
ctacagaatgctaagttcgtaatcaatggtgaaggtaaactagttattacttctcgtgcg
tctgaaatgaccatcattgatgagtttggtcgtacgaaagaaaactacaaactaccatac
ggttctcacctaactaagaacgacggtgatgaggttaaagctggcgaagttatcgctaac
tgggacccacacacaatgccaatcatcactgaagtggcaggtcgtatccagtttgttgac
ctaatcgatggtgtgactgtatctcgtcaaactgatgagctaactggtctatctatgatt
accgtacttgacgctgcagagcgtacaggtgcaggtaaagatatgcgtccaactgttaaa
ctagttgatgaaaacggtaacgatgtaatgatctctggtactgaaattccagctcaatac
ttcctacctggtaaagcaatcatccaactagatgacggtgctcttgtgggcattggtgat
acgttagctcgtatccctcaggcatctggcggtactaaagatatcaccggtggtctacca
cgagttgctgacctattcgaagctcgtaagcctaaagaaccagcaatccttgcggaaatt
actggtactgtttctttcggtaaagaaactaaaggtaagcgtcgtctaatcctgactcct
gcagagggtcagccatacgaagagatgattcctaagtggcgtcagcttaacgtatttgaa
ggcgataaagttgagaaaggtgacgtaatcgccgatggtccagagtctccacacgatatc
ctacgactacgtggcgtgttcgcagtagcagaatacatcgtgaacgaggttcaggaagtt
taccgtcttcagggcgttaagattaacgataagcacatcgaaacgatcattcgtcagatg
ctgcgtaaggtaacaatcacagctcctggtgattctgagttcctagaaggtgagcaggta
gaatactctcgtgtaactatcgcgaaccgtcagctagaagctgaaggcaaaactcctgca
gcatatgctcgtgacctactaggtatcactaaagcatcgctagcaacagaatcattcatc
tctgctgcgtcgttccaggaaacgactcgcgtactaacagaagctgcagtttctggtaag
cgtgatgagctacgtggtctgaaagagaacgttattgttggtcgtctgatcccagctggt
actggtttcgcacaccaccaacaacgtcaacgtagccgtgatgctgagtttgagccagta
gcacctcagatcgatgcagaacaagcatcacaagatctagctgcactgcttaacgcaggt
cttagcgacgaagattaa
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integrated database retrieval system
