Photobacterium damselae subsp. damselae: CAY62_00925
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Entry
CAY62_00925 CDS
T04927
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pds
Photobacterium damselae subsp. damselae
Pathway
pds03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAY62_00925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pds03019
]
CAY62_00925
03016 Transfer RNA biogenesis [BR:
pds03016
]
CAY62_00925
Enzymes [BR:
pds01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CAY62_00925
Messenger RNA biogenesis [BR:
pds03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CAY62_00925
Transfer RNA biogenesis [BR:
pds03016
]
Prokaryotic type
tRNA degradation factors
CAY62_00925
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Rho_RNA_bind
Casc1_C
Motif
Other DBs
NCBI-ProteinID:
ARR48266
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All DBs
Position
I:182432..185017
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AA seq
861 aa
AA seq
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MSTGTTDLPVDPFRDREATNYENPIPSREMLLEVIRGFDTPISRDQLFAELKLEGDDQYE
GLRRRLRAMERDGQLIFTRRQCYALPERLDLIKGYVMGHRDGFGFVRPEGNMSKDDDLLL
PVHQMRGVIHGDYILAQVAGVDKRGRKEGRVVRVLKPTTAQIVGRFFIEDGMGYVVPDDS
RIAQDIVIPQADRLGARMGNVVVVEITQRATRQYNAVGKVVEVLGENMAPGMEIEIALRT
HDIPHEWPADVEKQIKDLTEEVPEEAKQGRVDLRQLPLVTIDGEDARDFDDAVFCEKKKS
GGWRLWVAIADVSYYVRHDSALDKEAVKRGNSVYFPSQVIPMLPEVLSNGLCSLNPQVDR
LCMVCEMTISDTGKLSGYKHYEAVMNSHARLTYTKVSKMLEGDEELRERYAPLVPHLEEL
YSMYKVLKEAREARGAIEFETVETQFIFNADRKIDRIVPAVRNDAHKIIEECMILANIAS
ARFVEKAKEPALYRVHDVPGEERLTGFRDFLGELGLQLDGGFEPAPADYAKLAHQIEGRE
DKELIQTMLLRSMKQAVYQADNIGHFGLALKQYAHFTSPIRRYPDLTLHRAIKYLIAKQE
GRNQDRWTPTGGYHYSFDDIDVLGEQCSMTERRADDATRDVADWLKCEYMQDHLGDEFDG
VIANVTGFGFFVRLNELNIDGLVHVSNLANDYYQYDPIGQRLMGESSGQIYRLGDSVKVK
VAAINLNDRQIDFDLVGSKRKVRGEGKTAKNRDKKQRMRKAEGLKRQSLKVYRVEDGAAV
VDPAKQEQQQAEKKKDRRSTRQKLKQGAIPKFEDDKAPKGRGKGGKKKASTDTKAKAKPS
TAARKKKKQRVGKAERAAKKK
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgtctacaggtacaaccgatttaccggtcgacccatttcgcgatcgcgaagcaactaac
tatgaaaatccgattccaagtcgcgagatgctacttgaagtgattcgaggctttgatacg
ccaatcagtcgtgatcagttgtttgcggaattgaaattggaaggggatgaccaatacgaa
ggattacgccgtcgcttacgtgcgatggagcgtgatggtcaattaatttttactcgtcgt
cagtgttatgcactgcctgaacgtctggacctgatcaaaggttacgtcatgggtcaccgt
gatggttttggctttgttcgtccagaaggcaacatgtcaaaagacgacgatttactactg
cctgttcatcagatgcgcggtgtgatccacggtgattacattttagctcaagtggcaggt
gtcgataaacgtggtcgtaaagaaggtcgcgtagttcgagtattaaaaccaacaacggct
caaattgttggtcgcttctttattgaagatggcatgggttatgtggtgccagatgattca
cgtattgcgcaagatatcgtgattccacaagccgatcgcttaggtgcccgtatgggtaat
gtggtggtggttgaaatcacccaacgagcgactcgtcagtacaacgctgtaggtaaagtg
gtggaagtccttggtgaaaatatggcaccaggtatggaaattgaaatcgcgttacgcacc
catgatattcctcatgaatggccagccgatgttgaaaaacagatcaaagacttaaccgaa
gaagtgccagaagaagcgaagcaaggtcgagttgatttgcgtcagttgccattggttacc
attgatggtgaagatgcgcgcgactttgacgatgctgtcttttgtgagaagaaaaaatca
ggcggctggcgtctttgggttgccattgctgatgtgagctactacgttcgtcacgattct
gctttagataaagaggcggttaaacgtggtaactcggtttacttcccatcgcaagttatt
ccgatgctacctgaagtgctatcaaatggcctgtgttcacttaacccgcaagtggatcgc
ttgtgtatggtgtgcgagatgaccatttccgatacgggtaaattatctggttataagcac
tacgaagcggtaatgaattcgcatgctcgtttaacgtacaccaaagtaagcaaaatgctt
gaaggtgatgaagagttgcgtgaacgttatgcgccactagttcctcatcttgaagagctt
tatagcatgtataaagtgctaaaagaggctcgtgaagcacgtggcgcaattgaatttgaa
acggtagaaacgcagttcattttcaatgcggatcgtaaaattgatcgtattgtgcctgca
gtgcgtaatgatgcgcataagatcatcgaagaatgtatgatcttagccaatatcgcatcg
gctcgttttgttgaaaaagccaaagagcctgctctgtatcgtgtgcacgatgttccaggt
gaagagcgcttaacaggatttcgagacttcttaggtgagctaggtcttcagcttgatggt
ggttttgagccagcacctgctgattacgcgaaattggcacaccaaatcgaaggccgtgaa
gataaagaattgattcaaaccatgctgctacgctcaatgaagcaagcggtttatcaagcc
gataatattggtcactttggtttggctcttaagcagtatgctcactttacttcaccaatc
cgccgttatcccgatttaaccttgcaccgtgcaattaaatatctaatcgctaagcaggaa
ggtcgtaatcaagatcgttggacaccaacaggcggctatcactactcatttgatgatatc
gatgtgctaggtgagcagtgctctatgactgagcgccgcgctgatgatgcgacccgcgat
gttgccgattggttgaaatgtgaatacatgcaagaccacctaggcgatgagttcgatggt
gtgattgccaacgtaacaggctttggtttctttgttcgtcttaacgagctaaatattgat
ggtttggtgcatgttagtaatttagcgaatgattactatcaatatgacccgattggccaa
cgcttaatgggtgaaagttccggtcaaatctaccgcttaggtgactctgtcaaagtaaaa
gtggctgcaattaatctaaatgatcgtcaaattgactttgatttggttggcagtaaacgt
aaagtacgcggcgaaggcaaaacggcgaaaaaccgtgataagaaacagcgcatgcgtaaa
gctgaaggcctaaaacgtcaaagtttgaaggtttatcgtgttgaggatggggcggcagtc
gtagatcctgctaagcaagaacaacagcaagcagagaaaaagaaagatcgccgttcaact
cgccagaagctaaaacaaggtgctattccaaaatttgaggatgataaagcaccgaaaggt
cgcggcaaaggcggaaagaagaaagcatcaaccgataccaaggccaaagcaaagccatcg
acggcagcacgtaaaaagaaaaagcagcgtgttggtaaagcggaacgagcagcaaagaag
aaataa
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