Photobacterium damselae subsp. damselae: CAY62_01260
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Entry
CAY62_01260 CDS
T04927
Name
(GenBank) RNA polymerase-binding ATPase
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pds
Photobacterium damselae subsp. damselae
Brite
KEGG Orthology (KO) [BR:
pds00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pds03021
]
CAY62_01260
Transcription machinery [BR:
pds03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
CAY62_01260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ARR48327
LinkDB
All DBs
Position
I:complement(254805..257723)
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AA seq
972 aa
AA seq
DB search
MPFALGQRWISDTESDLGLGTVVALDARTVTLMFSASEENRLYARNDAPVTRVMFNVGDV
VESHEGWTLKVENIVEEKGVLTYVGTRTDTQEEDVALRELFLNHQIRFNKPQDKLFAGQI
DRMDRFALRYRALKNQYEQHKSPLRGLCGMRAGLIPHQLYIAHEVGRRYAPRVLLADEVG
LGKTIEAGMIIHQQVLSGRAERILILVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAYA
DAANPFDTAQYVLCSLDFLRKSRRRFEQALEADWDLLVVDEAHHLEWSEDKPSRQYQVVE
EIAEKTPSVLLLTATPEQLGRESHFARLRLLDPDRFYDYQEFVEEERKYEPVADAVSRLL
SGETLTEQEKETLAQLLPEQDIAPTLAFIESSSLDNGEAIAARNELIANLMDRHGTGRVL
FRNTRAAIKGFPQRHLNMYPLAMPTQYQTAMRVASMMAGRMSPEQKVMKLLYPEDIYQEF
EGDTATWWNFDPRVTWLIEHLKANRGEKVLVICSRAQTALTLEQALREREGIRASVFHEG
MSIIERDKAAAYFAQDEEGAQVLLCSEIGSEGRNFQFSNQLVMFDLPNNPDLLEQRIGRL
DRIGQKRDIEIHVPHLEGTSQALLARWYNEGLNAFEETCPTGRAVYDAHQDALLALLASE
KHDEAELENLITSSAAMHNELKAKLEQGRDRLLEMHSNGGEAAHALVDEISAKDGDTNLV
TFALGLFDTIGLNQDDRGENAIVVTPSEHMMVSSYPGLPYDGCTITFDRDTALSREDMHF
ISWEHPMIQGGIDLLLTEGVGTTAVSLLKNKALPVGTLLLELVYVVDAQAPKQSGIGRFL
PKTPIRILLDSKGNNLAANVEFESFNRQLSPVNRHLGSKLVNSVQKDIHVLIEHAERAIE
TELDQVRQQAQAEMEATLQAEFNRLQVLKAVNPNIRDDELELLQTQIQELTNYIGKAQIQ
LDSLRLIVVSHN
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgccatttgctttgggtcaacgttggatcagtgatactgagagtgatttaggtctgggt
accgttgtggcgctggatgcgcgtaccgtgactttgatgttttctgcctctgaagagaac
cgtctgtatgcacgcaatgatgctcctgttacccgtgtaatgtttaatgttggtgatgtg
gttgaaagccatgaaggctggaccctcaaagtcgaaaacatcgttgaagagaaaggcgta
ttaacttacgtcggaacccgtactgatactcaagaagaagatgttgcgttacgtgaacta
ttcttgaaccatcaaattcgcttcaacaagcctcaagataagctttttgcaggccaaatc
gatcgtatggatcgtttcgctctgcgttatcgagcattgaaaaaccagtacgaacagcat
aagagcccattacgtggtctatgcggtatgcgtgcaggtttgatccctcatcagctctat
attgctcatgaagtcggtcgtcgttatgcccctcgcgttttacttgccgatgaagtaggt
ctaggtaaaaccattgaagcgggtatgatcatccaccagcaagtgttatctggtcgtgct
gaacgtatcttaattttggtaccagaaactcttcagcatcaatggctggttgagatgatg
cgccgttttaacctgcacttctctatttttgatgaagagcgctgtgttgaagcctatgct
gatgcagctaacccatttgataccgcgcaatatgtgctttgttcattagacttcttacgt
aagagtcgtcgccgttttgaacaagctcttgaagccgattgggatctcttagttgtcgat
gaagctcatcacctagagtggagtgaagacaagccaagtcgccaatatcaagtggttgaa
gaaattgcagaaaaaaccccaagtgtgcttctgctaaccgcaacacctgaacaacttggc
cgcgaaagtcactttgcccgtttgcgtctactcgatccagatcgcttctatgattaccaa
gagtttgtcgaagaagaacgtaaatatgagcccgttgctgatgcggtttctcgcttatta
tcaggtgaaactttaactgagcaagagaaagaaaccttagcacaacttctacctgagcaa
gatatcgcgccaaccctagcgtttattgaatcatctagcttagataatggtgaagcaatt
gctgcccgtaatgagttaattgccaacttaatggatcgccatggtacaggtcgtgttcta
tttcgtaacactcgtgcagctatcaaaggtttcccacagcgtcacttaaacatgtatcca
cttgctatgccaactcaataccaaacggcaatgcgtgttgcaagcatgatggccggtcgt
atgagccctgagcaaaaagtgatgaaactcctgtacccagaagatatctatcaagaattt
gaaggtgatacagccacatggtggaactttgatcctcgtgtaacttggttaattgagcac
ttaaaagctaaccgtggtgaaaaagttttagtgatctgttctcgagctcaaacagcactg
acactagagcaagccctgcgcgaacgtgaaggtattcgagcatcagtgttccatgaagga
atgtcgatcattgagcgtgataaagcagcggcttactttgcgcaagatgaagaaggcgct
caggtactattgtgttcagagataggttctgaaggtcgtaacttccagttctctaatcaa
ttggtgatgttcgatctacccaataaccctgatttgttggaacagcgtattggtcgtctt
gatcgtattggtcaaaaacgcgatattgaaattcatgttccacatctagaaggtacatct
caagcgcttctggctcgttggtataacgagggtcttaatgcttttgaagagacttgccca
accggtcgtgcggtatatgatgctcatcaagatgctttattagcgcttcttgcaagtgaa
aagcacgatgaagcagaacttgaaaatctgatcaccagcagtgccgctatgcacaatgag
ctaaaagctaagctggagcaaggccgtgaccgtttattggaaatgcattcgaatggcggt
gaagcagcacacgctttagttgatgagatttcagcaaaagatggcgataccaacctcgtt
acctttgcgcttggtctatttgacaccataggtttaaaccaagacgatcgtggtgaaaat
gctattgtggttactccgtctgagcacatgatggtatcgagctacccaggtcttccatac
gacggttgtacgatcacctttgatcgtgatacggcactttctcgtgaagatatgcacttt
atcagttgggagcacccaatgatccaaggtggtatcgatctactattaacagagggtgtg
ggtacaactgcggtttctttactgaagaacaaagcattgccagttggtacccttctgctt
gaattggtttatgtggtagatgcccaagcaccaaagcagtcaggtattggtcgcttctta
ccaaaaacaccaattcgtatcttacttgatagtaaaggcaacaaccttgcagctaatgtt
gagtttgaaagctttaaccgccaactaagcccagttaaccgccatctaggtagcaaactg
gttaattcagtacaaaaagacattcacgtactaattgagcatgctgaacgtgcaattgaa
actgagctagaccaagttcgccagcaagcacaagcggaaatggaagcaacactacaagcg
gagtttaatcgcctgcaagtgctaaaagccgttaacccaaatattcgtgatgacgagtta
gaactactgcaaacgcagattcaagagctaacaaattacatcggtaaagcgcaaatccag
ttagattcactgcgcttaatcgtcgttagtcataactga
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