Photobacterium damselae subsp. damselae: CAY62_04260
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Entry
CAY62_04260 CDS
T04927
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pds
Photobacterium damselae subsp. damselae
Brite
KEGG Orthology (KO) [BR:
pds00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pds03016
]
CAY62_04260
Enzymes [BR:
pds01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CAY62_04260
Transfer RNA biogenesis [BR:
pds03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CAY62_04260
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ARR48866
UniProt:
A0AAV6EPZ3
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All DBs
Position
I:926000..927148
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AA seq
382 aa
AA seq
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MEFTIITTTADLKMVCQAASSAPAIMLDTEFVRTRTLYPKLGLIQLFDGKQLSLIDPLAI
EDMEPLWDLLRDQSVMKVLHACGEDLEVFQHHAGCLPVPMLDTQLMAAFLGHGVSTGFGA
LVKEYVGVELDKGEARTNWLARPLTDRQLNYAAADVFYLLPLYETLLEKVEAAGYREALE
QECNATMLKRVKQADPSKAYLNIKNAWQLNPKQLAILQKLAAWRVLESQKRDIAVNFIVK
ELNLWKIARYNIKSKAVMEKEGFEPMEIQRHANRLLKMVYDVDSMSALDYPDKIQRLVDF
AGYKQAVKRLKDVVVDVEKKTGLAPEFLASKKQIHQVLSWAWKHQYAEDKRPEMLKTWRK
PLFEERVMGLLEKMSPNSASLK
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
ttggaatttacaattattacgaccactgccgacttaaagatggtatgccaagcggcgtct
tctgcgcctgctatcatgcttgatactgagtttgttcgtacacgtacactttatcctaaa
ttgggtttgattcagctatttgatggcaaacaactctctttgattgatcctttagcaatt
gaagacatggagccattatgggatttactacgcgatcagtcagttatgaaagtgctgcac
gcttgtggtgaagatttggaagtgtttcagcatcatgctggatgcctgcctgtacctatg
cttgatacccaacttatggcggcttttttaggtcacggtgtctcgacaggttttggagcc
ctagttaaagagtatgtgggtgttgagcttgataaaggtgaagctcgtacaaattggctt
gctcgtccactgacggatcgccaattgaattacgcagcagctgatgtattttatttattg
cctctgtatgaaactttgttagaaaaagtagaggccgctggatatcgcgaagcgttagag
caagagtgtaacgctactatgcttaaacgagtaaaacaagccgatccaagcaaagcgtat
ttaaatattaagaacgcatggcaattaaatccaaagcaattagctatattgcaaaaatta
gccgcatggcgtgtattagaatcacaaaaacgtgatattgcggttaactttatcgtaaaa
gaactgaatttatggaaaattgctcgctataacattaagtccaaagcggtaatggaaaaa
gaaggctttgaaccgatggagatccaacgtcatgcaaatcgtctattaaagatggtgtat
gatgtggattcaatgtcagcgcttgattatccagataaaattcaacgactggtcgatttc
gctggatacaaacaggcggttaaacgtctgaaagatgttgtagttgatgtcgagaagaaa
acggggttagcgcctgaatttctggcatcaaaaaagcagattcatcaagtactgtcttgg
gcttggaagcatcaatatgcggaagataaacgcccagaaatgctaaaaacgtggcgaaaa
ccattatttgaagagcgagtaatgggcttattagaaaaaatgtcacctaattcggcaagc
ttgaaataa
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