Photobacterium damselae subsp. damselae: CAY62_06860
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Entry
CAY62_06860 CDS
T04927
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pds
Photobacterium damselae subsp. damselae
Pathway
pds03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pds00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CAY62_06860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pds03400
]
CAY62_06860
Enzymes [BR:
pds01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
CAY62_06860
DNA repair and recombination proteins [BR:
pds03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
CAY62_06860
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CAY62_06860
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CAY62_06860
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
DUF3514
Motif
Other DBs
NCBI-ProteinID:
ARR49320
LinkDB
All DBs
Position
I:1476015..1477436
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AA seq
473 aa
AA seq
DB search
MIKKNEPSLYWIDYETFGASPATDRPCQFAGIRTDMDLNIIGEPLVIYCKLPHDYLPSPE
ACLITGITPQEANEKGLSEPEFIARIHKELSKPNTCVVGYNNVRFDDEVTRYTLYRNFYD
PYGWSWQQGNSRWDLLDIMRTCYALRPDGINWPTDDEGLPSFKLEKLSVANGIEHSNAHD
AMADVYATIEMAKLVKQNQPKLFDYLFNNRHKNKLQQLIDVVNLTPLVHVTGMFGTVCGN
TSWIVPIAWHPDNKNAVITINLAQDPTPLIELDSETIRTRLYTKRADLAADELPIPLKEV
HLNKCPILAPAKTLTANDADRLDIDREQCLKNLALIKQHPEIREKVLEVFSVKREFDNHD
NVDAMLYDGFFSHADRAAMDIIRETAPEELANLQLEVADKRIKPLLFRYRARNFPMTLSY
EEQTRWKHHCQDYFEANIPRYMENFEQVALDNQSDENKMAILHKLGQYISTLC
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagaaaaacgaaccaagcttatactggattgattacgaaactttcggcgcaagc
cctgcgaccgatcgtccatgtcagtttgccggtattcgtacagatatggatctcaatatc
atcggtgaaccactcgttatctactgcaaactgcctcacgattacctgccatctccagag
gcttgtttaatcacagggatcaccccacaagaagccaatgaaaaaggtctctcagagcct
gaatttattgctcgtattcacaaagagctttcaaaaccgaatacttgtgtggtgggatac
aataacgtccgctttgatgacgaagtcactcgttatactttataccgtaacttttatgac
ccatacggttggagttggcagcaaggtaattcgcgttgggacttactggatattatgcgt
acttgttacgcgctgcgtcccgacggtatcaactggccaaccgatgatgaaggcttacca
agcttcaagctagaaaaactctccgtagcaaatggcattgaacacagtaatgcccacgat
gcgatggctgatgtgtatgcaaccattgagatggcaaagttagttaaacaaaatcaacct
aagctgtttgattacctattcaataatcgtcataagaacaaactgcagcaacttattgat
gtggttaatcttaccccgctagttcatgttacaggtatgtttggtaccgtatgtggcaat
actagctggattgtgccgattgcatggcatccagataataaaaatgccgtgattaccatt
aacctagcgcaagacccaacaccactgattgaattagatagtgaaactattcgaactcgt
ctatatacaaaacgtgccgatctagcagccgatgaattgccgatcccgctaaaagaagtt
catctcaataaatgtccgattttagctccagcaaaaacgttaacagcaaatgatgcagac
cgtttagatattgatcgtgagcagtgcttaaaaaatctggctcttattaagcaacaccca
gaaattcgcgaaaaagttttagaggtatttagcgttaaacgtgagtttgataatcacgat
aacgtagatgctatgttatatgatggtttcttctctcatgccgatcgtgcagcgatggat
atcattcgggaaacggcaccggaagagttagcaaacttacagttagaagtggccgataaa
cgtattaaaccactgcttttccgctatcgcgctcgtaacttcccgatgaccttaagttac
gaagaacaaacacgctggaagcaccactgccaggattattttgaggcgaatattccacgt
tatatggaaaactttgaacaggttgcattagataatcaaagtgatgagaacaagatggca
atactgcacaaacttggccagtatatttctactctctgttga
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