Photobacterium damselae subsp. damselae: CAY62_06955
Help
Entry
CAY62_06955 CDS
T04927
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pds
Photobacterium damselae subsp. damselae
Pathway
pds03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pds00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAY62_06955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pds03019
]
CAY62_06955
Enzymes [BR:
pds01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CAY62_06955
Messenger RNA biogenesis [BR:
pds03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CAY62_06955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ARR49338
UniProt:
A0A1C3DZP4
LinkDB
All DBs
Position
I:complement(1497018..1498304)
Genome browser
AA seq
428 aa
AA seq
DB search
MSFDSLGLHPKLLQAIHELGFEQPTPVQEQAIPLALTGVDVMAGAQTGTGKTAAFALPML
HRLMSYPAASELHADEAEQTEQRKQPALIRGLVLTPTRELAQQVYDNVMTYCKHTDLKVV
VAYGGTSMNVQVKALQQGADIVIATPGRLIDHMHVGTLSLKYLECFVLDEADRMLDMGFI
IDIKRIMKRMAAERQTLFFSATFSKQVKKLAFDIMTEPKMVEVTPANTAAETVQQMVYPV
DKHRKRELLSYLIGSRNWQQVLVFTKTKQGSDELVKELGLDGIKAASINGDKSQGARQRA
LDDFKSGKVRALIATDVAARGIDIEQLEYVVNFDMPFKPEDYVHRIGRTGRAGSAGHAIT
LMSLDEEWILKGIEELLDTRLPQQWLEGFEPDPLATVETTMPKRSAEKRRAKAKAKIHQN
RGKNNRRR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttgactccctaggtcttcatccgaaattacttcaagctatccatgaacttgga
tttgagcagccaaccccagtgcaagaacaagcaattcctctcgcgttaacgggcgttgat
gtaatggctggagcccaaactggtactggtaaaacagctgcatttgcactgccgatgctg
catcgtttaatgagttatccggctgcgagtgaattacatgcagatgaagcagaacaaacc
gaacagcgtaagcaacctgcattgattcgtggtttggtgttaacaccgactcgagagctt
gctcagcaggtttacgataatgttatgacttactgtaaacataccgatttaaaagtggtt
gttgcctatggtggtactagcatgaatgttcaggttaaagcacttcaacaaggtgctgat
atcgtgattgctacaccgggacgattaattgatcacatgcatgttggtacgctatcacta
aaatatcttgaatgttttgtgcttgatgaagcggaccgtatgctagatatgggctttatc
attgatattaagcgtattatgaaacgcatggctgctgaacgtcagacactgtttttctct
gctacgttctctaagcaagttaagaaattagcgtttgatattatgacagagccaaaaatg
gttgaggtaacacctgcgaatacggcagccgaaacggttcaacaaatggtttatccggtt
gataagcatcgtaaacgtgaattgctttcatacttgattggctctcgtaactggcagcaa
gtgcttgtctttactaaaaccaagcaaggctctgatgaattagtaaaagagcttgggtta
gatggcattaaagccgcttcgattaatggtgataagagtcaaggtgctcgtcagcgggca
ttggatgactttaaatcgggtaaagttcgagcattaattgcaaccgatgtggcggcgcga
ggtattgatatcgagcagctagaatatgttgtgaattttgatatgccatttaaacctgaa
gactatgttcaccgtattggtcgcacaggccgagcgggcagtgctggacatgccattaca
ctgatgagcttagacgaagagtggattttaaaaggcattgaagaactgctggatacacgt
ttacctcagcagtggttagaaggctttgagccagatcctttagcaacagttgaaaccaca
atgccaaagcgctctgctgaaaaacgtcgcgcaaaagcgaaagcaaaaattcatcaaaat
cgcggtaaaaataatcgccgtcgataa
DBGET
integrated database retrieval system
