Photobacterium damselae subsp. damselae: CAY62_07905
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Entry
CAY62_07905 CDS
T04927
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pds
Photobacterium damselae subsp. damselae
Pathway
pds03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pds00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CAY62_07905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pds03400
]
CAY62_07905
Enzymes [BR:
pds01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CAY62_07905
DNA repair and recombination proteins [BR:
pds03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CAY62_07905
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
SWI2_SNF2
RecG_dom3_C
CW_binding_2
T1R_D3-like
Motif
Other DBs
NCBI-ProteinID:
ARR50715
LinkDB
All DBs
Position
I:1720687..1724145
Genome browser
AA seq
1152 aa
AA seq
DB search
MKQNTILSIPLPKKAGESSYVGNLSGAALALSIAELAANHNGPILAVVPDSQTAVRLQPE
ISQFTHTDVTIFPDWETLPYDNFSPHQDIISDRLARLYQLPTQESGVLLVPISTLLQRLT
PREYLHQHALIVKKGDRLSLEKLRLQLEASGYRHVDQVIEHGEYASRGSLLDLYPMGSNH
PYRIDFFDDEVDSIREFDPENQRSTGEIEHINLLPAHEFPTDDLAVESFRVRWRERFEAR
REPESIYQQVSKKTWPAGIEYWQPLFFDHTESLFDYLPQQTLLVTLGELEPTVDQFLADV
DYRYDQRRVDPLRPLLEPKELWLTKDEMHIGFKQLPRVRIQQESVDIDKADRFNPALTKL
PELTINHQLKEPLAELRRFTEQFTGKVIFSVASEGRREALLDLLARIKLRPMVCANLTEA
VESPSNYTMVIGAAENGFLLSDPHVAFICESDLLGERVTQRRRREEKRTTVNADTIIRNL
AELQIDQPVVHIEHGIGRYKGLQTLEAGGITTEYVTLEYQNSAKLYVPVASLHLISRYSG
GAEETAPIHKLGGEAWAKARKKAAEKVRDVAAELLDVYAKRELKPGFKFKLDREAYADFC
TGFPFEETHDQALAINMVLSEMCQTKVMDRLVCGDVGFGKTEVAMRAAFVAVDNNKQVTV
LVPTTLLAQQHFENFRDRFANTPIRVEVLSRFKTAKEQKQILADVEEGKIDILIGTHKLL
NSTVKYHDLGLLIVDEEHRFGVRQKEKIKAIRANVDILTLTATPIPRTLNMAMSGMRDLS
IIATPPARRLAIKTFVREKDDAIVREAILREINRGGQVYFLHNEVDTIEKTVEDISKLVP
EARITFAHGQMRERELERIMSDFYHQRFNVLVCTTIIETGIDVPTANTIIMDRADNLGLA
QLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAIASLEDLGAGFTLATHDLEIRG
AGELLGDEQSGQIQSVGFTLFMEMLEQAVDALKEGKEPSLDDLLKEQTEVELRMPALLPD
DFMPDINTRLSMYKRIASAKDQTELDEIRVELIDRFGLLPEATKNLLALNQIKLKAAKIG
IRKIEAGEKGGYFEFSQDANINPAILVNLLQTQPQYYRMEGPTKLKIFLTDSDRQKRIKF
VNDLVDQLSQAA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaatacaatactctcaattcctcttccgaaaaaagcgggagaaagtagctat
gttggcaacctatctggtgctgcacttgcattatcgattgctgaattagcggctaaccat
aacggtcctatacttgctgtggtgccagatagccaaacagcagtcagactacaaccagag
attagccagtttacccatactgatgtcactatttttcctgattgggaaacgctgccttat
gacaacttttcccctcatcaagatatcatctcggatcgcttagctcgactatatcaacta
ccaacacaagagtctggagtactgctcgtacccattagtacgctgctgcaacgattaacg
ccgcgagaatacctccaccagcatgctctcatcgtcaaaaaaggtgatcgcctctcttta
gagaaattacgcctacagctagaggcatccgggtatcgtcatgtggatcaagttattgag
catggtgaatacgccagtcgaggctctctactcgatctatatccaatggggagtaatcat
ccttatcgtattgatttttttgatgatgaagtagattccattcgtgagttcgatcctgaa
aatcaacgttctacgggtgaaattgagcatattaatttactgccagctcatgaatttcca
accgatgatctggcggtagaaagcttccgtgtacgttggcgtgaacgttttgaggcgcgc
cgagaacctgagtctatttatcaacaagtcagtaaaaaaacatggcctgcgggtatcgaa
tactggcaacctctattttttgatcataccgaaagcttgtttgattatttaccccaacaa
acattgcttgtgacattaggtgagcttgagcctaccgttgatcaattcttagccgatgtg
gattatcgctacgatcaacgccgagtcgatccactccgccctcttcttgagcctaaagag
ctctggttaaccaaagatgagatgcacattggctttaaacagttgccaagagtgcgcatt
cagcaagagagtgtcgatattgataaagcggatcgtttcaatccagccctaactaaactg
ccagagttaacgattaatcatcagctaaaagagccattagcagaactgcgccgctttact
gaacagtttacaggtaaagtcattttttctgttgcctctgaaggtcgtcgagaagcatta
ctcgatcttctggctcgaatcaaattacgaccaatggtctgtgccaacttaacagaagca
gttgaaagcccatcaaattacaccatggttattggtgctgctgaaaatggctttttactg
agcgaccctcatgttgcctttatctgtgaaagtgatcttcttggtgagcgtgttactcag
cgtcgtcgtcgagaagaaaaacgaacaaccgttaacgcagataccatcattcgtaactta
gcagaattgcaaattgaccaacccgttgttcatattgagcacggtatcggtcgttataaa
ggcttgcaaacgctagaagctggcggtattacaaccgaatacgtaacgttggaataccaa
aacagtgccaaactgtatgtgcccgttgcctctcttcatttaatcagtcgctattctggc
ggtgccgaagaaacagcgccaatacacaaattaggcggtgaagcatgggccaaagcgcgt
aagaaggctgcagaaaaagtacgagatgttgcagcagaattgttggatgtctatgccaag
cgtgaacttaaacctggctttaaatttaagctcgatcgagaagcctatgctgatttctgt
acaggattcccatttgaagaaacccatgaccaagcactggcaattaatatggtgttgtct
gagatgtgtcaaacaaaggtcatggatcgtttagtttgtggtgatgttggctttggtaaa
accgaagtcgcaatgcgagctgcatttgttgctgttgataataacaaacaagttacagtc
ctcgtaccaacaacacttttggcccagcagcacttcgaaaacttccgagaccgctttgct
aatacgccaattcgagttgaagttttatctcgctttaaaacagcgaaagaacaaaaacag
attttagccgatgttgaagaaggcaagattgatatcttaatcggtactcataaactgctt
aatagcacagttaaatatcatgatttgggtctattaattgtagatgaagagcatcgcttt
ggtgtccgtcaaaaagagaagatcaaagccattcgagctaacgttgatattctaacactt
actgcgacaccgattcctcgaactcttaatatggcaatgagtgggatgcgcgatctttct
attattgccacccctcctgctcgccgattagctattaagacctttgttcgagagaaagat
gatgccatcgttcgtgaagcaattttacgtgaaattaatcgtggtggtcaggtttacttc
ctacataatgaagtcgataccattgaaaaaaccgtagaagatatcagtaagctagtacct
gaagctcgaatcacttttgctcacggccaaatgcgcgaacgagaacttgagcgcattatg
agtgatttttatcaccaacgatttaacgtgttagtttgtacaaccatcattgaaacaggg
attgatgttccaaccgctaacaccattattatggatcgtgctgataacttaggtttggct
caattacaccaattacgaggccgtgttggtcgctctcaccatcaggcttatgcttactta
ctcacacctcaccctaagcgtatgactaaagatgccgtgaaacgtttagaagctattgcc
tcacttgaagatttaggtgcagggtttactttggcaactcacgatctagaaattcgtggt
gctggtgaattattaggcgatgaacaaagcggacaaattcaatccgttggctttacgttg
tttatggaaatgctagagcaagccgttgatgcattaaaagaaggtaaagagccttctctt
gatgatctgcttaaagagcaaacagaagttgagttgagaatgcctgcgcttctacctgat
gattttatgcccgacatcaatacgcgtttgtccatgtacaaacgtattgccagcgcaaaa
gatcaaaccgaacttgatgaaattcgagttgagctgatcgaccgctttggtctattacca
gaagcgaccaaaaacctattagcgttaaatcaaattaagttgaaagccgctaaaattggg
attcgcaaaattgaagcgggcgaaaaaggtgggtacttcgaatttagccaagatgccaat
attaaccctgcaattttggttaacttactgcaaacccagccacaatattatcgaatggaa
ggaccaacaaagcttaagatcttcttaaccgacagtgatcgtcaaaaacgtatcaagttt
gttaatgatcttgtcgatcaactatctcaagctgcctag
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