Photobacterium damselae subsp. damselae: CAY62_11025
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Entry
CAY62_11025 CDS
T04927
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pds
Photobacterium damselae subsp. damselae
Pathway
pds03030
DNA replication
pds03430
Mismatch repair
pds03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pds00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAY62_11025
03430 Mismatch repair
CAY62_11025
03440 Homologous recombination
CAY62_11025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pds03032
]
CAY62_11025
03400 DNA repair and recombination proteins [BR:
pds03400
]
CAY62_11025
Enzymes [BR:
pds01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CAY62_11025
DNA replication proteins [BR:
pds03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CAY62_11025
DNA repair and recombination proteins [BR:
pds03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CAY62_11025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ARR50016
LinkDB
All DBs
Position
I:complement(2373756..2377235)
Genome browser
AA seq
1159 aa
AA seq
DB search
MAEPRFIHLRVHSDFSMIDGLAKVKPIIKKASELQMPALAITDFTNLCGLVKFYYAAHDA
GIKPIIGADFKVQSEELGDELFDLTILAANNEGYKNLTLLISEAYQRGHVQHQPVIDKEW
LIKHKDGLILLSGGKTGDVGKALLKGNQNMVEQCVAFYQTYFPDSYYLELVRTGRSDEEA
YLHFAIELAEKAQLPVVATNDVRLLSADQFEAHEIRVAIHDGYTLADPNRPKNYSAQQYL
RSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPTGELSTEDFLIVKSKEGL
EERLEFLFPDPDVRAERRPEYDERLEIELEVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPAEPGMTLAKAFDAEPQ
LQQSYDSDEEVKELIDMCRILEGVTRNAGKHAGGVVISPTTITDFAPLYCDAEGHHPVTQ
FDKNDVESAGLVKFDFLGLRTLTIIDWALGMINPRLEAQGKDPVNIAAIPMADQKSFTML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKDILDPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRAVFEAGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKIIGLVDECHRMKLKLLPPDVNKGLYRFNVDDQGAIVYGIGAVKG
VGEGPIENIIAAREAGGHFKDLFDFCARIDTKKVNKRVLERLIKSGAMDRLGPNRASMMA
SLDDAIRAASQHHQAEAFGQTDMFGVLTEAPEEVEHKYANIPEWPDKVWLEGERETLGLY
LTGHPINAYLSELKHYTTWRLKDAQPTRRDGAATVAGLVIAARVMTTKRGTRIGLLTLDD
RSGRMEVMLFSEALERYLDLIETDRIVVVTGQVSFDDYNGGLRMSAREVLDISDAREKHL
RGLAISVTEQQIDDKFFARFSEILEPHKAGTVPVNVYYQRSNARAKLTLGTEWRITPADQ
LISDLKILLGEKQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaccacgttttattcaccttcgagtacacagtgatttctcgatgatagatggt
ctggcgaaagtcaaaccaattatcaaaaaagcctctgaacttcagatgccagccttagct
ataactgactttactaacttatgtggtttagtgaagttctattatgctgcgcatgatgcg
ggcattaagccaattatcggcgccgactttaaggttcagagtgaagagttaggtgatgaa
ctttttgatttaacaatccttgctgctaataacgagggttataaaaacttaactctactt
atttcagaagcttatcaacgtggtcatgttcaacatcaacctgtgattgataaagagtgg
ttgattaagcataaagatggcttaattcttttatcaggtggtaaaaccggtgatgttggt
aaggccctgctcaaaggtaaccagaatatggttgagcagtgtgtggcgttttatcagacc
tatttcccagacagttactatcttgaattagtacgaactggtcgttcagatgaagaggcg
tatttgcattttgctattgagttagcagaaaaagcacaattacctgttgtagcaaccaat
gatgttcgattattgtcggctgatcaatttgaagcccatgaaattcgagttgccattcac
gatggttacacgctagccgatccaaaccgccctaaaaactatagtgctcaacagtatctt
cgcagtgaagaagaaatgtgtgagctgtttgctgatattccagaagcgcttgaaaatagt
gtcgaaattgctaagcgttgtaatgttactgtacgtcttggtgagtacttcctgcccaac
tttccaactggtgagctaagcacagaagacttccttattgtgaagtcaaaagaaggctta
gaagagcgtttagagtttcttttcccagatcctgatgttcgtgctgagcgccgtcctgaa
tatgatgagcgcttggagattgaactggaagtgattaaccaaatgggattccccggttac
ttcttgatcgtaatggagttcatccaatggtcaaaagataatggggtaccagtaggtcca
ggtcgtggttcaggtgcgggctctttagtggcttatgcgcttaagatcactgaccttgat
ccacttgaatttgatttgctgttcgaacgatttctaaacccagaacgtgtatccatgccc
gatttcgacgtcgatttttgtatggataagcgtgatcaggttatcgatcacgtcgcggat
atgtatggtcgagatgcggtatctcagattatcacctttggtaccatggcggcgaaggcg
gtaattcgagatgtcggtcgtgttcttgggcacccatacggctttgttgatcgtatttca
aagctagtaccagcagaaccgggtatgacgctggcaaaagcatttgatgccgaacctcaa
cttcaacaatcttatgattcagatgaagaagtcaaagagctgattgatatgtgtcgtatt
cttgaaggtgtgacccgaaacgcaggtaagcacgccggtggtgtggttatctcaccaacg
accattacagattttgctccactgtattgtgatgcagaaggccatcatccagttacccaa
tttgataagaacgacgttgaaagtgctggtctagttaaatttgactttttggggctacga
acattaaccatcattgactgggcattgggtatgatcaatccacgcctagaagctcaaggt
aaagaccccgttaatattgcagcaattccaatggcggatcagaagtcatttactatgctg
cagcgttcagaaacgactgcggtgttccagcttgaatctcgtggtatgaaagatctgatc
aaacgtcttcaaccagactgtttcgaggatatgatcgcactggtggccttgttccgtcct
ggtcctttgcaatcgggcatggtagataactttattgaccgtaagcatggtcgagaagcg
atctcttatcccgatgaaaaatggcagcatgagtcactaaaagacattctagatccaacc
tatggcatcatcttgtatcaggaacaggtaatgcagattgcgcaggtcttggctggttat
actcttggtggcgccgatatgcttcgtcgtgcgatgggtaagaaaaaaccagaagagatg
gcgaaacagcgtgctgtttttgaagctggtgcgattaagaatggcgtcgatggtgaactg
tcgatgaagatctttgacctggtagagaaatttgccggttatggttttaacaaatcccac
tcagcagcttatgctttggtttcttatcaaactttgtggctaaaagcgcattatccagct
gaatttatggctgcggtaatgactgcggatatggataataccgataagatcattggcttg
gttgatgaatgtcaccgtatgaagctaaaactactgccaccagatgtaaataaaggtcta
tatcgtttcaacgttgatgatcaaggtgccattgtttatggtattggcgcagtaaaaggt
gttggtgaaggaccgattgaaaacatcattgcagcacgtgaagcgggtgggcactttaaa
gatttatttgatttctgtgctcgcatcgatactaaaaaagtgaacaaacgtgttcttgag
cgtctaataaaatcaggagcaatggatcgattggggccaaaccgtgcctcaatgatggct
tcgcttgatgatgctattcgagctgccagtcagcaccatcaagcagaagcatttggtcaa
actgatatgtttggcgtgttgactgaagcacctgaagaggttgaacacaaatacgcaaat
attccagaatggccagataaagtttggttggaaggcgagcgagagactttaggactatac
ctaactggtcaccctattaatgcgtatctatcggagctgaagcactatacgacttggcgt
ttgaaagatgcccagccaactcgtcgcgatggggcggcaacggttgcaggtcttgtgata
gccgctcgtgtgatgacgactaagcgtggaacgagaattggacttttaaccttagatgat
cgttcaggtcgaatggaagtcatgttattctctgaggcgttagaacgttatcttgatttg
attgaaactgaccgaattgttgttgtaaccggacaggtcagctttgatgattacaacggg
ggacttagaatgtctgcccgtgaagtgctcgatatttccgatgcacgtgaaaaacatttg
cggggattagccatttcggtaaccgaacagcaaattgacgacaaattttttgcccgtttc
agtgaaatactggaaccacacaaagcaggaactgtacctgttaatgtgtattatcagcgc
tcgaatgcccgtgccaaacttactttaggaacagagtggcgtattacgcctgccgatcaa
ctgatatcggatctaaaaatcctactgggtgagaagcaggtcgagcttgagtttaattaa
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