KEGG   Prevotella dentalis: Prede_0033
Entry
Prede_0033        CDS       T02403                                 
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
pdt  Prevotella dentalis
Pathway
pdt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pdt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Prede_0033
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pdt03019]
    Prede_0033
   03016 Transfer RNA biogenesis [BR:pdt03016]
    Prede_0033
Enzymes [BR:pdt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     Prede_0033
Messenger RNA biogenesis [BR:pdt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Prede_0033
Transfer RNA biogenesis [BR:pdt03016]
 Prokaryotic type
  tRNA degradation factors
   Prede_0033
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 KH_1 PNPase S1_RRP5 KH-I_KHDC4-BBP RNase_II_C_S1 Ribosomal_L32p Intein_splicing
Other DBs
NCBI-ProteinID: AGB27435
UniProt: F9D3J0
LinkDB
Position
1:42974..45217
AA seq 747 aa
MNVITKTVQLPDGRTISIETGKVAKQADGAAVLRLGNTVLLATVCAAKEAVPGTDFMPLQ
VDYREQYSAAGRFPGGFTKREGKPSDEEILTSRLVDRALRPLFPSDYHCEVYVQVMLLSA
DGVDQPDALAGFAASAAMACSDIPFDYTISEVRVARVNGEYVVNPTFQQMAEADMDLMVG
ATKDNIMMVEGEMKEVTEQDLIAALKVAHEAIKPMCELQDELARELGTDKKREYDDEVND
EELRTQVKGLYQQVYDVNRQALEKHARHDAFDKILADFLEAYDAAHADLAAEELDEKHAE
AARYYDDVMRDAMRRCILDEGLRLDGRATTEIRPIWCEVSPLPMPHGSALFQRGETMSLS
TCTLGTKLDEKLVDGVLNRSYQRFLLHYNFPPFSTGEAKAQRGVGRREVGHGHLAWRGLK
DQIPADFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVAGIAMGLIKNPGE
DKYAILSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAGREH
IMGEMMKTMSEPRAEMKPQVPRIVAIEIPKEFIGAVIGPGGKIIQQMQEDSGATITIDEV
DGVGKVQISAPNKDSIDIALGKIKAIVAMPEVGEVYDGTVKSVMPYGCFVEILPGKEGLL
HISEIEWKRLESVEEAGIKEGDKIKVKLLEVDPKTGKYKLSHRVLIEKPEGYVERERRPR
GDRRPRRDGDHRPHRFEHRDNDFSGEE
NT seq 2244 nt   +upstreamnt  +downstreamnt
atgaacgtaattacgaaaaccgttcagttgccagatggcagaaccatctcaattgaaacc
ggaaaggttgcgaaacaggccgacggcgccgctgtccttcgtttggggaacaccgtattg
ctggccactgtttgtgcagccaaagaggcagttccgggtacagatttcatgcctttgcag
gtagattatcgtgagcagtacagtgctgcaggccgcttccccggcggattcaccaagcgc
gaaggcaaacccagcgacgaagagattcttacttcacgtctcgtagaccgtgcccttcgt
ccgcttttcccatcagactaccattgtgaagtttatgtgcaggtgatgttgctctctgcc
gacggcgtggatcaacccgacgccctggctggttttgcagcatctgccgctatggcttgc
tccgatattccattcgactatacgatttccgaggttcgcgtggcccgtgtcaacggtgag
tacgtggtgaatcccactttccaacagatggccgaggccgacatggacctcatggttggc
gccaccaaagacaacatcatgatggtggaaggcgagatgaaggaggtgaccgagcaggat
ctcatcgccgccctcaaggtggcccacgaggccatcaagccgatgtgtgagctgcaggac
gagctggcccgcgagcttggaaccgacaagaagcgcgagtacgacgacgaggtgaacgac
gaggaactgcgcacacaggtgaaaggcctctaccaacaggtctatgacgtgaaccgtcag
gccctcgaaaagcacgcccgtcacgatgctttcgacaagattctggccgatttcctcgag
gcctatgatgctgcccatgctgatctcgccgccgaagagctggacgagaaacacgctgag
gccgcccgttattacgacgacgtgatgcgcgatgccatgcgccgctgcatcctcgacgag
ggtttgcgccttgacggccgcgccacgaccgagattcgccccatctggtgcgaggtgtcg
ccgctgcccatgccccacggaagcgccctcttccagcgcggcgagacgatgagtctctcc
acttgcacgctgggcaccaagctcgacgagaagctcgtcgacggcgtgctcaaccgcagt
taccagcgtttcctgctccactacaacttccccccgttctccacgggcgaggccaaggcc
cagcgtggcgtaggccgtcgcgaggtgggtcacggccatctggcctggcgtggactgaaa
gatcagattcctgccgacttcccttacactgtgcgtctggtgagccagatcctcgagagc
aacggctcttcgtcgatggcgaccgtttgtgccggtacgttggccctgatggatgccggt
gtgcccatgaagaaaccggtggccggcatcgccatgggactcatcaagaatcccggcgag
gacaagtatgccatcctgagcgacatcctcggtgacgaggaccacttgggcgacatggac
ttcaagaccaccggcaccaaggacggtctcaccgccacgcagatggacatcaagtgcgac
ggactgtcgttcgagattctggaaaaggctctcatgcaggcgaaggccggccgcgagcac
atcatgggcgagatgatgaagaccatgagcgagccgcgtgccgagatgaagccgcaggtg
ccgcgcatcgtggccatcgagattcccaaggagttcatcggtgccgtgattggcccgggc
ggaaaaatcatccagcagatgcaggaagacagcggtgccaccatcaccatcgacgaggtc
gacggcgtgggcaaggtgcagatttccgcacccaacaaggacagtatcgatattgccctg
ggcaagatcaaggccatcgtggctatgcccgaggtcggcgaggtgtacgacggcaccgtc
aagagcgtgatgccctacggctgcttcgtcgagattctgccgggcaaggagggactgctc
cacatctccgagattgagtggaaacgcctggagtcggtcgaggaggccggcatcaaggag
ggcgacaagatcaaggtgaagctcctggaggtcgatcccaagacgggcaagtacaagctc
tcccaccgtgtgctcatcgagaagcccgaaggctatgtggaacgtgagcgtcgtccgcgt
ggcgaccgtcgtccgcgccgcgacggcgaccatcgtccccaccgtttcgagcaccgcgac
aacgatttttcgggcgaggagtaa

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