Prevotella dentalis: Prede_0033
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Entry
Prede_0033 CDS
T02403
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pdt
Prevotella dentalis
Pathway
pdt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Prede_0033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdt03019
]
Prede_0033
03016 Transfer RNA biogenesis [BR:
pdt03016
]
Prede_0033
Enzymes [BR:
pdt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Prede_0033
Messenger RNA biogenesis [BR:
pdt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Prede_0033
Transfer RNA biogenesis [BR:
pdt03016
]
Prokaryotic type
tRNA degradation factors
Prede_0033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
RNase_II_C_S1
Ribosomal_L32p
Intein_splicing
Motif
Other DBs
NCBI-ProteinID:
AGB27435
UniProt:
F9D3J0
LinkDB
All DBs
Position
1:42974..45217
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AA seq
747 aa
AA seq
DB search
MNVITKTVQLPDGRTISIETGKVAKQADGAAVLRLGNTVLLATVCAAKEAVPGTDFMPLQ
VDYREQYSAAGRFPGGFTKREGKPSDEEILTSRLVDRALRPLFPSDYHCEVYVQVMLLSA
DGVDQPDALAGFAASAAMACSDIPFDYTISEVRVARVNGEYVVNPTFQQMAEADMDLMVG
ATKDNIMMVEGEMKEVTEQDLIAALKVAHEAIKPMCELQDELARELGTDKKREYDDEVND
EELRTQVKGLYQQVYDVNRQALEKHARHDAFDKILADFLEAYDAAHADLAAEELDEKHAE
AARYYDDVMRDAMRRCILDEGLRLDGRATTEIRPIWCEVSPLPMPHGSALFQRGETMSLS
TCTLGTKLDEKLVDGVLNRSYQRFLLHYNFPPFSTGEAKAQRGVGRREVGHGHLAWRGLK
DQIPADFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVAGIAMGLIKNPGE
DKYAILSDILGDEDHLGDMDFKTTGTKDGLTATQMDIKCDGLSFEILEKALMQAKAGREH
IMGEMMKTMSEPRAEMKPQVPRIVAIEIPKEFIGAVIGPGGKIIQQMQEDSGATITIDEV
DGVGKVQISAPNKDSIDIALGKIKAIVAMPEVGEVYDGTVKSVMPYGCFVEILPGKEGLL
HISEIEWKRLESVEEAGIKEGDKIKVKLLEVDPKTGKYKLSHRVLIEKPEGYVERERRPR
GDRRPRRDGDHRPHRFEHRDNDFSGEE
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtaattacgaaaaccgttcagttgccagatggcagaaccatctcaattgaaacc
ggaaaggttgcgaaacaggccgacggcgccgctgtccttcgtttggggaacaccgtattg
ctggccactgtttgtgcagccaaagaggcagttccgggtacagatttcatgcctttgcag
gtagattatcgtgagcagtacagtgctgcaggccgcttccccggcggattcaccaagcgc
gaaggcaaacccagcgacgaagagattcttacttcacgtctcgtagaccgtgcccttcgt
ccgcttttcccatcagactaccattgtgaagtttatgtgcaggtgatgttgctctctgcc
gacggcgtggatcaacccgacgccctggctggttttgcagcatctgccgctatggcttgc
tccgatattccattcgactatacgatttccgaggttcgcgtggcccgtgtcaacggtgag
tacgtggtgaatcccactttccaacagatggccgaggccgacatggacctcatggttggc
gccaccaaagacaacatcatgatggtggaaggcgagatgaaggaggtgaccgagcaggat
ctcatcgccgccctcaaggtggcccacgaggccatcaagccgatgtgtgagctgcaggac
gagctggcccgcgagcttggaaccgacaagaagcgcgagtacgacgacgaggtgaacgac
gaggaactgcgcacacaggtgaaaggcctctaccaacaggtctatgacgtgaaccgtcag
gccctcgaaaagcacgcccgtcacgatgctttcgacaagattctggccgatttcctcgag
gcctatgatgctgcccatgctgatctcgccgccgaagagctggacgagaaacacgctgag
gccgcccgttattacgacgacgtgatgcgcgatgccatgcgccgctgcatcctcgacgag
ggtttgcgccttgacggccgcgccacgaccgagattcgccccatctggtgcgaggtgtcg
ccgctgcccatgccccacggaagcgccctcttccagcgcggcgagacgatgagtctctcc
acttgcacgctgggcaccaagctcgacgagaagctcgtcgacggcgtgctcaaccgcagt
taccagcgtttcctgctccactacaacttccccccgttctccacgggcgaggccaaggcc
cagcgtggcgtaggccgtcgcgaggtgggtcacggccatctggcctggcgtggactgaaa
gatcagattcctgccgacttcccttacactgtgcgtctggtgagccagatcctcgagagc
aacggctcttcgtcgatggcgaccgtttgtgccggtacgttggccctgatggatgccggt
gtgcccatgaagaaaccggtggccggcatcgccatgggactcatcaagaatcccggcgag
gacaagtatgccatcctgagcgacatcctcggtgacgaggaccacttgggcgacatggac
ttcaagaccaccggcaccaaggacggtctcaccgccacgcagatggacatcaagtgcgac
ggactgtcgttcgagattctggaaaaggctctcatgcaggcgaaggccggccgcgagcac
atcatgggcgagatgatgaagaccatgagcgagccgcgtgccgagatgaagccgcaggtg
ccgcgcatcgtggccatcgagattcccaaggagttcatcggtgccgtgattggcccgggc
ggaaaaatcatccagcagatgcaggaagacagcggtgccaccatcaccatcgacgaggtc
gacggcgtgggcaaggtgcagatttccgcacccaacaaggacagtatcgatattgccctg
ggcaagatcaaggccatcgtggctatgcccgaggtcggcgaggtgtacgacggcaccgtc
aagagcgtgatgccctacggctgcttcgtcgagattctgccgggcaaggagggactgctc
cacatctccgagattgagtggaaacgcctggagtcggtcgaggaggccggcatcaaggag
ggcgacaagatcaaggtgaagctcctggaggtcgatcccaagacgggcaagtacaagctc
tcccaccgtgtgctcatcgagaagcccgaaggctatgtggaacgtgagcgtcgtccgcgt
ggcgaccgtcgtccgcgccgcgacggcgaccatcgtccccaccgtttcgagcaccgcgac
aacgatttttcgggcgaggagtaa
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