Prevotella dentalis: Prede_1077
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Entry
Prede_1077 CDS
T02403
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pdt
Prevotella dentalis
Pathway
pdt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Prede_1077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdt03019
]
Prede_1077
03400 DNA repair and recombination proteins [BR:
pdt03400
]
Prede_1077
Enzymes [BR:
pdt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Prede_1077
Messenger RNA biogenesis [BR:
pdt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Prede_1077
DNA repair and recombination proteins [BR:
pdt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Prede_1077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ-1-like_HTH
RecQ_Zn_bind
RQC
HRDC
ResIII
HTH_26
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AGB28411
UniProt:
F9D270
LinkDB
All DBs
Position
1:complement(1352433..1354661)
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AA seq
742 aa
AA seq
DB search
MAQEVNLLEQLKHYFGFDAFKGDQEAIIRNLMAGNDTFVLMPTGGGKSLCYQLPSLIMDG
TAIVVSPLIALMKNQVDVINGLTEEDGVAHFLNSSLNRAAINQVEQDVHSGKTKLLYVAP
ESLNKEDNLAFFTSFKISFYAIDEAHCISEWGHDFRPEYRNIRPTIDRIACEQHVDKVPV
IALTATATDKVRTDIKKSLGIMDAPDFKSSFNRPNLYYEVRPKVSEEDTDSQIIRFLRQH
EGKSGIVYCLSRKKVEELSKKLQLNGFKAAPYHAGLDTELRTKTQDDFLKEELDVIVATI
AFGMGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDDGEGICIAFYSPKDLKKLEKFMEN
KGEAEKEIGRQLLEETKAYAETSVCRRRFLLHYFGEEYPKPDCGNCDNCKHPQKPRDAQD
ALVEVLSAVRAVKENFDQPYIIDFVKGRATDNIVRHGHDQLPEFGGGAKINEEMPGIWHP
VIRQAMISHYIRKDVENYGLLKLTPEGLGYLKSPKPFMVVLDREFDDVEETSDGGTSALD
ENLHALLKKLRKDVARRHNLPPYVIFQDASLTLMATSYPTCMEELLQIQGVGQGKARKFG
KPFVDLIKQYCEDNGIQRTDMMRVISLPNKSLKKLKIIELIDKRVPLDEIANAQGCDFDE
LLDEIETIVNSGMKVNLNYYLDDENVMDPDEMEDIYEYFRGSESDDIDKAIDEVDIYDDD
HGLTAEEKARLVLIKFLSEEAN
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggaagtaaacctgctcgaacaactgaagcactatttcggctttgacgctttc
aaaggcgatcaggaagccatcatccgcaacctcatggcgggcaacgacacgtttgtgctg
atgcccaccggcggcgggaagagtctctgctatcagctgccctcgctgattatggacggc
acggccatcgtcgtgtcgccactcattgcgttaatgaagaatcaggtggacgtcatcaat
ggccttaccgaggaagacggtgtggcccacttcctcaactcctcgctcaaccgtgccgcc
atcaaccaggtggagcaggacgttcattcgggcaagaccaagctgctttatgtggctccc
gagtcgctcaacaaggaagacaacctggctttcttcacttcgttcaagatttcgttctac
gccattgatgaggcccactgcatatcggagtggggacacgactttcgtcccgagtaccgc
aacatccgtcccacgatagaccgcattgcttgtgagcaacatgtggacaaggtgcccgtc
atcgcgctcaccgccacggccaccgacaaggtgcgtacggatattaagaagagcctgggc
atcatggatgcgcccgacttcaagagctcgttcaaccggcccaacctgtattatgaagtg
cgcccgaaagtgagcgaggaagacaccgacagccaaatcatccgctttctgaggcaacac
gagggcaagagcggtatcgtctattgcctctcgcgcaagaaagtggaggagctgtcaaag
aaattacagctcaatggtttcaaggcagcaccctatcatgccgggctggacacggagttg
cgcacgaagactcaggacgactttctcaaggaggagctcgacgtcattgtggctaccatc
gcctttggcatgggcattgacaagcccgacgtgcggtttgtcatccactacgacataccc
aagagcctcgaaggctactatcaggagacgggccgcgccggccgcgacgacggcgagggc
atttgcatcgctttctattcgcccaaggatctgaagaagttggagaagttcatggagaac
aagggcgaggcagagaaggagatagggcggcagttgctcgaggaaaccaaggcctatgcc
gagacctcggtgtgccgtcgcaggttcctgttgcattatttcggagaggaatatcccaag
cctgactgtgggaactgcgacaattgcaagcatccgcagaagccgcgcgatgcgcaggat
gcgcttgttgaggtgctgagcgccgttcgcgccgtgaaggaaaacttcgaccaaccctat
attatagactttgtaaaaggccgtgccaccgacaacattgtgcgtcacgggcacgaccag
ctgcccgaatttggcggcggggccaaaatcaatgaggagatgcccggcatctggcatccg
gtcatccgtcaggccatgatttctcattatatccgcaaggacgtggaaaactatggtctg
ctgaagctcacacccgagggacttggctatctcaagagtcccaaaccgttcatggtggtg
cttgaccgcgagttcgacgatgtggaggaaacgtcggacggaggcaccagcgcactcgac
gagaacctgcatgccctgctcaagaagttgcgcaaggacgtggcccgccggcacaacctg
ccgccctacgtcatctttcaggatgcctcgctcacgctcatggccactagctatcccacc
tgtatggaggaactgctgcaaatccagggggtggggcagggcaaggcccgcaagtttggt
aagccctttgtcgatctcatcaagcagtattgcgaggacaacggcattcagcgcactgac
atgatgcgcgtcatcagcttgcccaacaagtcgctcaagaagctcaaaatcattgagctt
atcgacaaacgcgtgccgcttgacgagatcgccaatgcgcaaggctgcgatttcgacgag
ttgctcgacgaaatagagaccatcgtgaacagtggcatgaaggtcaatctgaactattat
ctcgacgatgagaatgtcatggatcctgacgagatggaggacatctacgagtatttccgc
ggcagcgagtccgacgacattgacaaggccatcgacgaagtggacatctacgatgatgat
cacgggctcacagccgaggagaaagcccgcttggtgctcatcaagttcctgtccgaggaa
gccaattga
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integrated database retrieval system
