Prevotella dentalis: Prede_1376
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Entry
Prede_1376 CDS
T02403
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pdt
Prevotella dentalis
Pathway
pdt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Prede_1376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdt03019
]
Prede_1376
03016 Transfer RNA biogenesis [BR:
pdt03016
]
Prede_1376
Enzymes [BR:
pdt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Prede_1376
Messenger RNA biogenesis [BR:
pdt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Prede_1376
Transfer RNA biogenesis [BR:
pdt03016
]
Prokaryotic type
tRNA degradation factors
Prede_1376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
OB_Dis3
GMT-wHTH
RNase_II_C_S1
OB_RNR_1st
Ago_PAZ_arc
Motif
Other DBs
NCBI-ProteinID:
AGB28692
UniProt:
F9D320
LinkDB
All DBs
Position
1:complement(1723732..1725930)
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AA seq
732 aa
AA seq
DB search
MAKGKKGGKRMTKKQLTEKLVQFFSSQPGKTLSFKEIFRMLHLDTHPLKMLAIDVMEEMA
WDDFITKVTETSYALNTKGQVQDGTFIRKTNGKNSFVPDGGDKPIFVAERNSMSALTGDR
VRVSFMARRQRHIKEAQVIEILKRAKDVFVGRLRVDRDIAFLVPQNDTFVHDVLIPKKKL
KGGKTGDKALVRIVQWPDQDHRNLMGEVVDVLGPSGENDVEMNTILAQYGLPYKYPKHVE
EAANRISGEITPEDEAEREDFRSVWTCTIDPADAKDFDDALSIRQLDKGLYQVGVHIADV
SHYVTEGSIIDKEAVKRATSVYLVDRTIPMLPERLCNFICSLRPDEDKLAYSVVFNLDEE
ANIKNHRIVHTIIRSKRRYAYEEAQQVLEANGVVDGTGNPAPDPGKKGYKGDNGWELCTL
DRLAKKLRAQRFRNGSVKFDSEELHFDIDEKGHPTRAFFKRSKDANKLIEEFMLLANRTV
AESIGRRPKGKTAKTLPYRIHDNPDPQKMENLREFIVKFGYKVKTDGTRSAMARSINKLM
DDCEGKREQKLIQAVALRAMMKAKYSVHNIGHFGLAFDYYTHFTSPIRRYPDMMVHRLLT
KYAQGGRSANEKHCEELCEHCSEMEQIAQNAERDSIKYKMVEYMADKLGNEYDAHISGIT
SYGIYAEIDENHCEGMVPMRDLDDDYYDFDERNFLLRGRRHHHKYQLGDAVRIKVAKANL
EKRQLDFTLAEK
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaggaaagaaaggcggcaagcgcatgacgaagaaacaactcacggaaaaactg
gtgcagttcttctcgtcgcagccgggaaagacattgtctttcaaggaaatattccgcatg
ctgcacctcgacacgcacccgctgaagatgcttgccatcgacgtgatggaggaaatggcg
tgggacgacttcataacgaaagtcactgaaacctcttacgccctcaacaccaaggggcag
gtgcaggacggaacctttatccgcaagaccaatggaaagaactctttcgtgcccgatggc
ggcgacaagcctatctttgtggccgagcgcaactccatgtcggccctgacgggcgaccgc
gtgcgcgtgtcgttcatggcccgacggcaaaggcacatcaaggaggcgcaggtcatcgag
atactcaagcgggccaaggacgtgtttgtgggacggcttcgcgtggaccgcgacattgct
ttcctcgtgccccagaacgacactttcgtgcacgatgtgctcattcccaagaagaagctc
aagggcggaaagacgggcgacaaggccctggtgaggattgtgcaatggcccgatcaggac
catcgcaacctgatgggcgaggtcgtcgacgtgctcgggccgagcggtgagaatgatgta
gagatgaacaccatcctggcacagtatggcctgccctataaatacccgaagcatgtagag
gaggctgccaacaggatcagtggagaaatcacgcccgaggacgaggccgaacgcgaggat
ttccgcagcgtttggacctgcaccatcgacccagcggacgccaaagacttcgacgatgca
ctctcgatcaggcagctcgacaagggcctctaccaggtgggcgtgcacattgcagacgtg
tctcactacgtgaccgagggcagcatcatcgacaaggaggccgtgaaacgggccacatcc
gtctatcttgtggaccgcaccatccccatgttgcccgagcggctctgcaatttcatctgc
tcgctgcgcccggatgaggacaagttggcctacagcgtcgtcttcaatcttgacgaagag
gccaacataaagaaccatcgcatcgtgcacaccatcatccgatcgaaacgccgctacgcc
tatgaggaggcgcagcaggtacttgaagccaacggcgtggtggacggaacgggcaaccct
gcccccgatcccggcaagaaaggatacaagggagacaatggctgggagctgtgcacgctg
gaccggctggccaagaaactgcgcgcacaacggttcagaaacgggtcggtgaagttcgat
tccgaggagctgcacttcgacatcgacgagaaaggacaccccacacgcgctttcttcaaa
cgctcgaaagacgccaacaagctcatcgaggagttcatgctgctggccaaccgcaccgtg
gccgagagcatagggcgaaggcctaaaggcaagaccgccaagactctgccctaccgaata
cacgacaatcccgacccgcagaagatggaaaacctgcgcgaattcatcgtgaaattcggt
tacaaggtgaagaccgacggcacacgcagcgccatggcacggagcattaacaagctcatg
gacgactgcgagggcaagcgcgagcagaaactcatccaggccgtggctctcagagccatg
atgaaggccaagtacagcgtgcacaacatcgggcacttcggcctggctttcgactactac
acgcacttcacttcgcccattcgccgctatcccgacatgatggttcaccgactgctaacc
aaatatgcacagggcggacgctcggcaaacgagaagcattgcgaggaactctgcgagcat
tgctcggaaatggagcagattgcacagaacgcagagcgcgactccatcaagtacaagatg
gtggaatacatggccgacaagctcggaaacgagtacgacgcccacatcagcggcatcaca
agctacggcatctatgccgaaatcgacgagaatcactgcgaaggaatggtgccgatgcgc
gacctggacgacgactattacgacttcgacgagagaaatttcctgcttcgcggccgtcgc
catcaccacaaataccaactgggagatgccgtccgcatcaaggtggccaaggccaatttg
gagaagcggcagctcgatttcacactggctgaaaagtag
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