Prevotella dentalis: Prede_1506
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Entry
Prede_1506 CDS
T02403
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pdt
Prevotella dentalis
Pathway
pdt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Prede_1506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdt03019
]
Prede_1506
03009 Ribosome biogenesis [BR:
pdt03009
]
Prede_1506
Enzymes [BR:
pdt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Prede_1506
Messenger RNA biogenesis [BR:
pdt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Prede_1506
Ribosome biogenesis [BR:
pdt03009
]
Prokaryotic type
rRNA helicases
Prede_1506
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_helical
DbpA
ResIII
CMS1
Cas3-like_C_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AGB28819
UniProt:
F9D3F8
LinkDB
All DBs
Position
1:complement(1888554..1890500)
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AA seq
648 aa
AA seq
DB search
MKTFEELGVSEEIRRAIEELGFEHPMPVQEEVIPFLLGHGNDVIALAQTGTGKTAAYGIP
VLQRTDPTSKETQALILSPTRELCLQIADDLNAFAKYIDGMHVLPVYGGASIETQIRSLR
HGVQIIVATPGRLIDLMKRGVAKLDKVANVVLDEADEMLNMGFTESINAIFEGVPADRNT
LLFSATMGREIERIAKSYLHDYKEIVVGSRNEGAENVNHIYYMVNARDKYLALKRVVDFY
PHIYGIVFCRTKIETQEIADKLIKDGYNADSLHGDLSQQQRDLTMQKFRNHLIQILVATD
VAARGLDVDDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKFKVRNIEKV
IGKEFIDGTLPAPEEICKKQLYKVMDDIMKTDVDEELIAPYMTEIDRQFEYIDKEDIIKK
MVSITFGRFLDYYKNAPEILKPTTKRNAERGDKGTDRKAGRPRGKREAETGFRRLFINLG
KQDGFYPGEIMQFMNHHVHGRQEVGHIDLLSKFCYIEVPEADAPKVMRALNGTIYKGREV
RCNDADEGGRGNDRTTRDGRATREGRESRSPREGRSYKSTRGGERAERKGRARSMREEAG
STAFAGEDGRRHSRDDWKSLMQNASMKLRGEEPDFSEEGWARRQPKKQ
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
ttgaagacatttgaagaattaggtgtcagcgaagagattcgccgcgccattgaggagctg
ggctttgaacatccaatgcccgtgcaggaagaagttatcccatttttacttggtcatggc
aacgatgtcatcgctctggcacagaccggaacgggcaagacggccgcctacggcattccc
gtgctgcagcgtacagaccccaccagcaaggagacacaggccttgatcctgagccccacg
cgtgagctctgtctgcagattgccgacgacttgaacgcctttgccaagtatatcgacggc
atgcacgtgctacccgtctacggcggagcgtccatcgagacgcagattcgctcactgcgc
cacggcgtgcagattatcgtggccaccccgggccgcctcatcgacctgatgaagcgcggc
gtggccaagctcgacaaggtggccaacgtggtgctcgacgaggccgacgagatgctcaac
atgggattcaccgagagcatcaacgccatcttcgagggtgttcccgccgaccgcaacacc
ctgctcttctcggccacgatgggccgcgagatagagcgcatagccaaaagctacctgcac
gactacaaggaaatcgtggtgggctcgcgcaatgagggcgccgagaacgtgaatcacatc
tattatatggtgaacgcccgcgacaaatacctggcgctcaaacgtgtggtggacttctat
ccgcacatctacggcatcgtgttctgccgtacgaagatagagacccaagagattgccgac
aagctgattaaggacggatacaacgccgactccctgcacggcgacctgagccagcagcag
cgcgacctcacgatgcagaagtttcgcaaccacttgatacagattctcgtggccaccgac
gtggccgcacgcggccttgacgtggacgatctgacccacgtcatcaactacgggctgccc
gacgacatcgagaactacacccaccgctcgggtcgcacgggccgcgccggcaagaaaggc
acgtcgatttccatcatccactcgcgcgaaaagttcaaggtgcgcaacatcgagaaggtg
attggcaaggagtttatcgacggcacgctgcccgctcccgaggagatttgcaagaagcag
ctctataaagtgatggacgacatcatgaagaccgacgtggacgaagagctcattgcaccc
tacatgacggagatagaccggcagtttgaatacatcgacaaggaagacatcatcaagaaa
atggtgagcatcacctttggacggttcctcgactactataagaacgcacccgaaattctc
aagcctaccaccaagcgcaacgcagaacgtggcgacaagggcaccgaccgcaaggccgga
cgaccgaggggcaagcgtgaggctgagaccggattccgccgcctgttcatcaatctgggc
aagcaagacgggttctatcccggcgaaatcatgcagttcatgaaccaccatgtacacggc
cggcaggaggtgggacacatcgatctgctgtcgaagttctgctacatcgaggtacccgaa
gccgatgccccgaaagtgatgcgtgcgctgaacggcaccatctacaagggacgcgaggtg
cgttgcaacgacgccgacgagggcggacgcggcaacgaccgcaccacacgggacggacgg
gccacacgcgagggccgcgagagccgcagcccgcgcgagggccgcagctacaaaagcacc
cgcggcggagagcgtgccgagcgcaagggccgtgcccgcagcatgcgcgaggaagccggc
agcacagctttcgccggtgaagacggccgccgccacagccgcgacgactggaagagcctg
atgcagaacgcctcgatgaagctgcggggagaggagcccgacttctccgaagagggatgg
gcgcgccgacaaccgaagaagcagtaa
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integrated database retrieval system
