Paenibacillus durus: PDUR_07645
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Entry
PDUR_07645 CDS
T03297
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pdu
Paenibacillus durus
Pathway
pdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PDUR_07645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdu03019
]
PDUR_07645
03400 DNA repair and recombination proteins [BR:
pdu03400
]
PDUR_07645
Enzymes [BR:
pdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PDUR_07645
Messenger RNA biogenesis [BR:
pdu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PDUR_07645
DNA repair and recombination proteins [BR:
pdu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PDUR_07645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Helicase_Sgs1
ResIII
HHH
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIQ11820
UniProt:
A0A089HM79
LinkDB
All DBs
Position
1616546..1618390
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AA seq
614 aa
AA seq
DB search
MNPQELTMEYAQDMLQKYYGYPDFREGQKKIVASLLEGRDTLGIMPTGGGKSICYQVPAL
LLPGLTLVVSPLISLMKDQVDALTAAGIPAAYINSTLTGKEVNERIRAARRGELKLLYVA
PERLELDWFRLEMAELSISCVAVDEAHCVSQWGHDFRTSYLAVSPFVEELPERPILAAFT
ATATPEVMEDMRRLLRLRDPGVFVTGLGRDNLAMSVLRGESKKEFVLEYAASHAHQPGIV
YAATRKEVDDLYQRLRNAGFAAGRYHAGMSDEERAESQEAFLYDDIRVMVATNAFGMGID
KSNVRYVIHYNMPKNMEAYVQEAGRAGRDGEPSQCFLLFSAQDIMTQKFLIEQNPQDSER
KANDYRKLQQMIDYCYTTRCLRSAMLDYFGEVHGDKPCGICSSCTDERELVDMTIDAQKI
FSCIHRMRERFGVALVSSVLKGSRSQKVLQYGFDKLPTHGAMSGRTEKEITEIVNVLISE
GYLALSEGQYPVVRLQQAAAEVLRGQQQVLQRVVRPSRPSAGGRDRSRSRDLSPSAVNET
VFEQLRLIRRELAGREHVPSYIIFNDATLREMSVAAPQTEEEMMKVKGVGEVKYRKYGKE
FLDFFQSELYSNES
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgcaagagcttacgatggaatatgcgcaggacatgctgcaaaaatattacggc
tatcccgatttccgggagggccagaaaaaaatcgtcgcgagtctcctggagggccgcgac
acgctcggcattatgccgaccggtggcggcaaatcgatctgctatcaggtaccggcgctg
ctgcttccgggcctgacgctcgtcgtgtcgccgctgatctctctaatgaaggatcaggtc
gacgcgctgacggcggcgggcattcccgccgcttatatcaacagcaccttaaccggcaaa
gaggtgaacgagcgcatccgcgccgcccgccggggcgagctgaagctgctctatgttgcg
cccgagcggctggagctggactggttccgcctggagatggcggaattgtcgatatcctgc
gtcgcggtggacgaggcgcactgcgtctcgcagtggggccatgatttccgcaccagctac
ctagcggtgtcgccgtttgtggaggagcttcccgagcggccgattctggcggcttttacg
gcgacggcgacgcccgaggttatggaggatatgcgaaggctgctccggctgcgcgatccg
ggcgtcttcgtgacgggtcttggccgcgacaatctggcgatgtcggtgctgcgcggcgag
agcaagaaggagttcgtgctggagtatgccgcttcgcatgcccaccagccggggatcgtg
tacgcggctacccgtaaagaagtcgacgacctgtaccagcgtctgcggaatgccggattc
gcggcgggccgctaccatgccgggatgagcgacgaggagcgggcggagagccaggaagcg
ttcctgtacgacgatatccgcgtcatggtcgcgaccaacgccttcggcatggggatcgac
aagtcgaacgtgcggtatgtcatccattacaatatgccgaagaatatggaggcttatgtc
caggaagcgggccgcgcagggcgggacggcgagccgagccagtgcttcctgctgttcagc
gcgcaggatatcatgacgcaaaagttcctgattgagcagaacccgcaggactcggagcgt
aaggctaacgattaccgcaagcttcagcagatgatcgattactgctatacaacccggtgc
ctgcgaagcgctatgctggactacttcggcgaagtccacggggacaagccgtgcggcatt
tgcagctcctgcacggacgagcgcgagcttgtcgacatgaccatcgacgcgcagaagatc
ttctcctgcatccaccggatgcgcgagcgtttcggcgtggcactggtgtcgtccgtgctg
aagggctcgcgcagccagaaggtgctgcagtacggcttcgacaagctgccgacccatggc
gcgatgtccggccgcaccgagaaagaaattacggaaatcgtcaatgtgctgatttccgaa
ggttatctggccttgtccgaaggccagtacccggttgtgcggctccagcaggcggccgcc
gaggtgctgcgcgggcagcagcaggtgctgcagcgtgttgtccggccgtccaggccgtcc
gcaggcggcagggaccgcagccgcagccgcgatctctcgccgtcggccgtcaacgagacg
gtgtttgagcagctgcgcctgatccgccgcgagctggcgggccgggagcatgtgccgtct
tatattattttcaacgatgcgacgctgcgggagatgagcgtggcagccccgcagacggaa
gaagaaatgatgaaggtaaagggcgtcggggaagtgaaataccggaagtatgggaaggaa
tttctggatttttttcaaagcgaattgtattccaatgaatcgtaa
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