Paenibacillus durus: PDUR_16625
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Entry
PDUR_16625 CDS
T03297
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pdu
Paenibacillus durus
Brite
KEGG Orthology (KO) [BR:
pdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdu03032
]
PDUR_16625
03400 DNA repair and recombination proteins [BR:
pdu03400
]
PDUR_16625
Enzymes [BR:
pdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PDUR_16625
DNA replication proteins [BR:
pdu03032
]
Prokaryotic type
DNA Topoisomerases
PDUR_16625
DNA repair and recombination proteins [BR:
pdu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PDUR_16625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_RPB9
Auto_anti-p27
Toprim_3
DUF7340
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AIQ13360
UniProt:
A0A089HRL8
LinkDB
All DBs
Position
complement(3764409..3766508)
Genome browser
AA seq
699 aa
AA seq
DB search
MADSLVIVESPAKAKTIGKYLGSKYIVKASMGHVRDLPKSQIGVEVENDFNPKYITIRGK
GSVLKELKDASKKVKKVYLAADPDREGEAIAWHLAHALELDNTQDCRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIIMDREN
EISAFVPEEYWSITAKLGIRDSLFEARFYKLNGEKKELGRERDVQEVMKAIEGADFIVSE
VKEKERQRHPSAPFTTSSLQQEAARKLGFRAAKTMSVAQQLYEGVELGKEGTVGLITYMR
TDSTRISATAQEEAKELISGKYGKDFLPESPRQYSKKAAGAQDAHEAIRPTSALREPDTV
KEFTSRDQFRLYKLIWERFTSSQMASARLDTLSVDISAGEVVFRAVGSKVSFPGFMKVYV
EGNDDGTTEEEKYLPQLQAGDKLISQEIEPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFMPTELGELVIEQMEQFFPEILDVEFTAHMEGDLDHVEEG
AEDWVKVLAEFYNSFEKRLEVAEEEMKEIEIVDEVSDEICEKCGKPLVYKLGRFGKFLAC
SGFPDCRNTKPIIKDIGVGCPKCHEGKVVERRSKKGRVFYGCDRYPECDFVSWDKPSSKP
CPECGSWMVEKRNKQGTRLQCTSCDHTESLEDSEEETAE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
gtggctgattctttggtcattgtcgagtcgcctgcaaaggcgaagaccatcggcaaatat
ttgggcagcaaatatattgtaaaggcatcaatgggacatgttcgcgacttgcccaaaagc
cagattggtgtagaagtcgagaatgactttaatcccaaatatattacaattcgcggcaaa
ggctcggtgcttaaagagctgaaagacgcaagcaaaaaagtcaaaaaagtatatctggcg
gctgacccggaccgcgaaggagaagcgattgcctggcatctggcgcatgcgctggaactg
gacaatacgcaggattgccgcgtcgtgttcaacgagattacgaagcaggccgtgaaggac
gcttttaagactccgcgcaaaataaatatggatctggtcaacgcccagcaggcccggcgc
atccttgaccggcttgttggttataaaatcagccctttattatggaagaaagttaaaaag
gggctgtccgccggacgtgtacagtcggtagcggttaaaatcattatggaccgggagaat
gagatctcggcattcgtgccggaggaatactggagcattaccgccaagcttggtatccgt
gattccttattcgaggccagattctataaattaaatggcgagaaaaaggaacttgggcgc
gagagggacgtacaggaagtaatgaaggcgattgaaggcgccgatttcatcgtcagcgaa
gtgaaggaaaaggaaagacagcgtcatccgtcagctccatttacaaccagctcccttcaa
caagaagcggctcgcaagctcggattccgggcggcgaagacgatgtctgtcgcccagcag
ctgtatgagggtgtggagctcggaaaagaaggcacagttggtcttattacgtacatgcgt
acagactctactcggatatccgcgacagcgcaggaagaagcaaaggagctgatctccggc
aaatacgggaaggattttctgccggaatcgccgcgtcaatactccaagaaggcggccgga
gctcaggacgcgcatgaagcgatccgcccaacttcggcgctgcgcgaaccggataccgtc
aaagagtttaccagccgcgaccagtttcggctttacaagctgatatgggaacggtttacg
tccagtcagatggcttcggcccggctggatacgctgtcagtcgacatttcggcaggcgag
gttgtgtttcgtgccgttggttcgaaggtgtcttttcccggctttatgaaggtgtatgtg
gaaggcaacgatgacggcacaacggaagaggagaagtacctgcctcagctgcaggctgga
gataagctgatttcgcaggaaatcgagccgaaacagcattttactcagccgccgccccgt
tatacggaagcgcgtctcgttaagacgctggaggagctgggaattggacgtccaagcacc
tatgcgccgacgctggaaaccattcagaagcgcggctatgtcgccatagaagaaaaaaag
tttatgcccaccgagctcggggaactggtcattgaacaaatggagcagttctttccggaa
atccttgatgtagaatttacggcccatatggaaggcgatcttgaccatgtggaagaaggc
gcggaagattgggtaaaagtgcttgctgaattttacaattccttcgagaagcgtcttgaa
gtggccgaagaggaaatgaaagagattgagatcgtggatgaagtttccgatgaaatttgc
gaaaaatgcggtaagccgctcgtttacaagctgggacgtttcggtaaatttttagcctgt
tcgggcttccccgactgccggaatacaaagccgatcattaaggatatcggggtaggctgc
ccgaaatgccatgaaggaaaagtcgtagagcggcgcagcaagaagggacgtgtcttctat
ggctgcgaccgttatcctgaatgcgactttgtctcctgggataaaccgtcttcaaaaccc
tgccccgagtgcggctcgtggatggttgagaaacggaacaagcaaggaacccggctgcag
tgtacgtcctgcgaccataccgagagtctggaggacagcgaagaggaaacggcggaataa
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