Paenibacillus durus: PDUR_20170
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Entry
PDUR_20170 CDS
T03297
Name
(GenBank) ATP-dependent helicase
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
pdu
Paenibacillus durus
Brite
KEGG Orthology (KO) [BR:
pdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdu03400
]
PDUR_20170
Enzymes [BR:
pdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PDUR_20170
DNA repair and recombination proteins [BR:
pdu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
PDUR_20170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
AIQ13970
UniProt:
A0A089HTB4
LinkDB
All DBs
Position
complement(4452817..4456320)
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AA seq
1167 aa
AA seq
DB search
MPVTFLIGRSGSGKTATIWSSICAALREDPLGAPVIQLVPEQGSFSAEQGLLSACDNQGS
LRAQTLSFPRLSYRVKQETGGRGGVPIGDEGKKMLLYKILSRRKEELKLFGASSDRPGFV
DRLSRLHSELKRCCLGTSDLEEQLSRMRESANGSPILTGKLEDLNIVFADLEQAMSGLYI
DEEDRLAELSELIPSSSFVCGSSIFVDGFRGFTAREFTVLRQLMLHAADMTIALTLDRPF
LDGHRPHELELFHPAASAYIKLRGMADELGIDVRDEVLAPTVLPRFAAAPALAHLERGFD
RRLMYEEPKPAEDEITIRAAANKRAEMEGALREMRRLAREEGAKYGEMAVFVRKLEDYDY
FVPALFRDYGVPFFLDRKAGELHHPLVEFIRSALDIVRRRWRYEDVFRCVKTGFLLPLDG
SLTRDDMDTLENYILACGIQGYRWTDEKYKWKAIPSLSLEGGGKTDARLVPLMEKCRKAV
TAPLKAFEQRIKKSRNGFDLCKSVFGLLEDSAAARKLEYMSAAALEEGRTQEAREHRQLW
GAVLDLLDQIVEMMGEETLSFDMFAGILETGLAELRMGLVPPALDQVLVGTMDRTRVSGA
KYAFLLGFNEGVVPALFQEDGVLSEVERSLLEGAGMELTPGSSRRMLDERFLIYTALTSA
SRKLWVSYACADDDGKGLLPSEIIRHLRRMYPLLAEKPLQSLPVSAPPEEHRDFIGHPEQ
TLRMLIVQLRQWKQGQDIPEIWWEVYNWFAERAEWRPRLQILISSLFYRNLGMPLRRETS
FRLYGGSTLRGSVSRMEKFVSCPFSHFASYGLRLKERQLYKLQAPDIGQLFHAALSTMAS
KLQSEGRSWGALTPDECRNEAVKTVDMLAPMLQGEILKSSKRYGYIARKLKNIVGRASVI
LGEHARRGSFDTAFLELDFGPGKPLPPLRIPLPNGCLMEVVGRIDRVDTAEGENGILLRV
IDYKSSRKDLKLHEVYYGLSLQMLTYLDVLLTYAEEWLGEPAFPAGTLYFHVHDPLLSSP
NGMSREQAQQELLKRFKMKGLLMADREVVSLMDTSLDKGHSSIVPVALKSDGSFYSSASV
ATPEQWDRLLSSVRGTITEIGTRITEGDVAITPYRIQQETACTFCSYRAVCQFDEAVEGN
GYKHLGKPGKDAIWEMLSRKDEGGSRP
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgccggtaacgtttttgatcggccgttcgggcagcggtaagacggcgacaatatggagt
tcgatctgtgcggcactgcgcgaggatccgttaggcgccccggtcattcaactggtcccg
gagcagggctccttcagcgccgagcaggggctgcttagcgcctgcgacaaccagggcagc
ctgcgcgcgcagacgctcagctttccgcgtctctcctaccgggtgaagcaggagaccggc
ggaagaggcggcgtgccgatcggcgatgaaggcaagaagatgcttctttacaaaatcttg
agccggcgcaaggaagaattgaaattgttcggagcttcgtcggaccgtcccggctttgtg
gaccggttgagccggctgcattccgagttgaagcggtgctgcctcgggacctccgatctg
gaggaacagttgtcccggatgcgggagtcggcgaacggtagtccgatccttaccggcaag
ctggaagacttgaatatcgtattcgcggatctggagcaggctatgtccgggctgtatatc
gacgaggaagatcggctggccgagctttcggagctgatcccctcttcctctttcgtatgc
ggttcctctattttcgtggacggcttccgggggtttacggcccgcgagtttacagtactg
cgccaactgatgctgcacgccgccgacatgacgatcgcgctgacgctcgaccggcccttt
cttgacgggcaccggccgcatgagctggagctgtttcatcctgcggcttccgcttacatc
aagctgagggggatggcagatgagctcggcattgatgtcagggacgaagtgctggcgcct
acggtgctgccgcgttttgcagcggcgcccgcattggcgcatttggagcgcggctttgac
cgtaggctgatgtacgaggaaccgaagcctgctgaagatgagataacgatccgggcggct
gcgaacaagcgcgcggaaatggaaggcgcgctgcgggaaatgcggagattggcgcgcgaa
gaaggggcgaagtatggcgaaatggctgtattcgtccgcaagctggaggattacgattat
tttgtgccggcccttttccgggattacggcgtaccgttcttccttgaccgcaaggcggga
gagcttcaccatccgctggtggagtttatccgttcggcgctggacatcgtccgccgccgc
tggcggtatgaggatgtattccgctgcgtcaagacgggctttctgcttccgcttgacggc
agcttgaccagggatgatatggacactctggaaaactatattcttgcctgcggcattcag
ggctaccgctggaccgatgagaaatacaaatggaaggcgatcccaagcctttcgctggaa
ggcggagggaagaccgatgcccggctggtgccgctgatggaaaaatgccggaaggcggta
actgcgccgctgaaggcttttgaacagagaattaagaagagccgcaacggatttgatctg
tgcaaatcggtattcgggctgctggaagacagcgccgccgcgcggaagctggaatacatg
agcgccgcagcgctggaagaagggagaacacaggaagcccgggaacaccggcagctgtgg
ggcgccgtccttgatctgctggatcagatcgtggagatgatgggcgaggagactttgagc
ttcgatatgttcgcgggaatattggagacggggcttgccgagctgcggatgggccttgtt
cctccggcgcttgatcaggtgcttgtcggaacgatggaccggacgcgggtctcgggagcc
aagtacgcttttttactcggctttaacgaaggggtcgtaccggcgctgtttcaggaagac
ggcgtgctgtccgaggtggagcgttcccttctggaaggagcggggatggagcttacgccc
ggatcttcccgccgaatgctggatgaacgctttttgatctatactgcgctgacttcggct
tcacgcaagctgtgggttagctatgcctgtgcggatgacgacggcaaaggcctgcttcct
tcggagattatccgccatttgcgcaggatgtatcctctacttgccgagaaacctctgcag
agtcttccggtgtccgctccgcccgaggagcatcgcgattttatcggccatccggagcag
actctgcgtatgctgatcgttcagctgcgccagtggaagcagggacaggatatcccggag
atctggtgggaggtctataactggtttgcagagagagcggaatggcgtccgcgtctgcag
atcttgataagctcgctgttttaccgcaatcttggcatgccgctccggagagaaacgagc
ttcaggctgtacggcggctccacgctgcggggaagcgtctcgcgcatggagaaattcgtc
tcctgcccgttctcccactttgcctcttacggcctgcggctcaaggagcggcagctgtac
aagcttcaggctccggatattgggcagctgttccacgccgcgctgagcaccatggcgtcg
aagctgcagagcgagggacgaagctggggcgctctgacgcccgacgaatgccgcaatgaa
gccgtaaagacggttgatatgctggcgccgatgcttcagggagagattttgaagagctcg
aagcgttatggctatattgcccgcaagcttaagaatattgtcgggcgggcttcggtcatt
ctgggagaacatgcaaggaggggcagcttcgacaccgcttttttggagctggatttcggc
ccgggcaagccgctgccgccgctgcgtatcccgctcccgaacggctgcttgatggaggtc
gtaggaaggatcgaccgcgtcgatactgctgagggcgagaacggaattctgctgagggtc
atcgactataaatccagccgcaaggatcttaagctgcacgaagtgtattacggtttatcg
ctgcagatgctgacctatctggatgtgctgttaacctatgctgaggagtggctgggggag
cccgcgtttccggcgggaacgctgtactttcacgtccatgatccgctgctctcatcgcca
aacggcatgagccgggagcaggcgcagcaggaactgctgaagcggttcaagatgaagggg
ctgctcatggcggatcgcgaagtcgtctcgctaatggatacgagcctggacaaggggcat
tcgagcatcgtgccggttgcgctgaagagcgacggcagcttttacagcagcgcctccgtc
gctacgcccgagcaatgggatcgtctgttgtcttccgtaagagggacgatcacagagatt
ggaacgcgcatcacggaaggggacgtagccatcacgccgtaccggattcagcaggagacc
gcatgcacgttctgttcctacagagcagtgtgccagttcgacgaggccgttgaaggcaac
ggatacaagcatttaggcaagccgggcaaagacgcaatctgggagatgctgtcccgcaaa
gacgaaggaggaagtagaccgtga
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