Paenibacillus durus: PDUR_24490
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Entry
PDUR_24490 CDS
T03297
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pdu
Paenibacillus durus
Pathway
pdu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pdu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PDUR_24490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdu03021
]
PDUR_24490
03400 DNA repair and recombination proteins [BR:
pdu03400
]
PDUR_24490
Enzymes [BR:
pdu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PDUR_24490
Transcription machinery [BR:
pdu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PDUR_24490
DNA repair and recombination proteins [BR:
pdu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PDUR_24490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AIQ14683
UniProt:
A0A089HWC8
LinkDB
All DBs
Position
complement(5306428..5310042)
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEFMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYGFQASMGAEAVKKLLQ
DLDIEKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNKPDWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKK
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGHAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL
NPKDGKPVVTPSQDMVLGSFYLTMDNKEEKGSGMILRTVNEAVSAYQRGTAGLHARVAIP
VKALNKTSFTEKQQNAMLITTVGKIIFNEIFPASFPYINEATRDNLLQGTPERYFIYEKG
ANIRELLDAVPIAGAVGKEYLGSIIARCFEIYHTTKTSVILDKIKQLGFTYSTRAGVTIA
VSDVIVPEEKKVILKESEEKVDVVAKQYRRGLITNEERYDRVIEIWSKTKDDLTNVLMKS
MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMATPSGRIFELPIKANFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDKGFTVSRIQDGKEVIEDL
YDRIEGRYCFETVRHPETGAIIVHRNDLIDSDKAEEIVKAGVGKLQIRSVLSCRARHGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVVKEIREAKDRREIEVQGEAESKVYSITYGSRLRVSEGDEVEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
IDAGDTNLLPGSFADIHEYESANKEVILSGKEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMNRYRNVKLVNPEEEQSEEEALET
VPAE
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgtaaacaattttgaattcatgaaaatcgggctggcttccccggagaagatt
cgttcttggtcccgcggagaggttaagaaaccggaaaccatcaactatcgcacactcaag
ccggaaaaagagggtcttttctgcgaacggatcttcggaccgcaaaaagactgggagtgt
cattgcggcaaatacaaacgcgtccgttataaaggcgtagtctgcgaccgctgcggcgtc
gaagtcacacgtgccaaagtgcgccgcgagcgtatgggccatattgagctagccgctcca
gtttctcatatctggtatttcaaaggcattccgagccgcatgggtctcgcgcttgacatg
tctccgagatcgctggaagagattatctacttcgcatcttatgtcgtaaccgatcccggc
gatacgcctctggagaagaaacagcttctgtccgagaaggaataccgcagctaccgcgag
aagtacggttacggcttccaggcgagcatgggtgcggaagcagtcaagaagctgcttcag
gatcttgatatcgaaaaagagctggaattccttaaggaagagttgcgcaccgctcaaggc
caacgccgcaaccgtgcgatcaagcgccttgaagtgatcgaagctttccgcaactccggc
aacaagcctgattggatgatcatggacgttctcccggttattccgccggaactgcgtccg
atggtgcaactagatggcggacgtttcgcaacgtccgacctgaacgacctgtaccgccgc
gtgatcaaccgcaacaaccgtctgaagagactgcttgatcttggcgctccggatattatc
gtgcagaacgaaaaacggatgcttcaggaagccgttgatgctctgatcgataacggccgc
cgcggccgcccggtaacgggtccaggcaaccgtccgttgaaatcgctcagccatatgctg
aaaggtaagcagggccgtttccgtcagaatctgctcggtaaacgggtcgactattccggc
cgttccgttatcgtcgtaggtccttacttgaaaatgtaccaatgcggcctgcctaagaaa
atggcgcttgagctatttaagccgttcgtgatgaaagaactggttaacaaaggccttgcc
cataacattaagagcgcgaaacgcaaagtcgagcgcgtaagcccggaagtatgggatgtg
cttgaagaagtcatcaaggagcacccggttttgctgaaccgtgcccccacgcttcaccgt
ctcggtatccaagcgtttgaaccgattctggtggaaggccatgccattcgtcttcatccg
ctcgtatgtacagcgtacaacgctgactttgacggtgaccaaatggccgtgcacgttccg
ctttccgcggaagcacaggcggaagcccgcattctgatgctggcgtccggcaacattttg
aacccgaaggacggcaagccggtcgttaccccttcccaggatatggttctcggttccttc
tatctgaccatggacaacaaggaagaaaagggcagcgggatgattctccgtaccgtgaac
gaagcggtttccgcttaccagcgcggaactgccggtcttcatgcgcgtgtagccattccg
gtcaaggcgcttaacaagaccagcttcaccgagaagcagcagaacgccatgctgatcaca
acggtcggcaaaattattttcaatgagattttcccggcaagcttcccttacatcaacgaa
gcgacacgtgataatctgttgcagggtacgccggagagatatttcatctatgaaaaaggt
gccaacatccgcgaactgcttgacgcggttccgattgcgggtgctgtcggcaaagaatat
ctgggctcgattatcgcccgctgtttcgaaatttatcatacgaccaaaacatcggtcatt
ctggataaaatcaagcagcttggctttacctactctacccgtgcgggcgtaacgatcgcc
gtatcggacgttatcgtaccggaagagaagaaggtcattctgaaagagtccgaagagaag
gtcgatgttgtcgccaagcaataccgccgcggtcttattaccaatgaagagcggtatgac
cgcgtcattgaaatttggtccaagacgaaggacgatctgaccaacgtgctcatgaaatcc
atggaccgtttcaattccatcatgctgatggtggattccaaagcacggggtaacaaatcg
cagattacccagcttggcgggatgcgcggactgatggcgacgccgtcgggacgcattttc
gaactgccgatcaaagcgaacttccgcgaaggcctgaccgtccttgagtactttatctct
actcacggcgcgcggaaaggtctggcggatacggcgcttcgtaccgccgactccggttac
ctgacacgccgtcttgtcgacgtggcccaggacgtaatcgtccgcgaggaagattgcggc
accgacaaaggctttaccgtcagccgtatccaggatggcaaagaggttatcgaggacctg
tatgaccgtattgaaggccgctactgcttcgagaccgtccgccatccggaaacaggcgca
atcattgtgcaccgtaatgatctgattgattccgataaagcggaggagatcgtcaaagcc
ggcgtaggcaagctgcaaatccgctccgtactgagctgccgcgcccgtcacggcgtctgc
aagaagtgctacggacgcaacctggctaccggcaagcacgtcgagatcggcgaagccgtc
ggcattatcgccgcacaatccatcggtgaaccgggaacgcagcttactatgcgtacgttc
cataccgggggcgttgcgggcgacgatatcacgcaaggtcttccgcgtatccaggagctg
tttgaggcgcgtaacccgaaaggccaagcgaccatcagtgaaatcgacggcgtcgtgaag
gagattcgcgaagcgaaagaccgccgcgaaatcgaggttcagggtgaagcggaatcgaaa
gtctactcgattacctacggatcacgcctgcgcgtaagcgaaggagatgaggtcgaggcc
ggtgacgaactgaccgacggttccatcgatccgaaagaaatgctgcgcatcaaggggatc
cgtggtgtgcagaactatatccttcaggaagtacagcgcgtataccggaatcagggcgta
gaaatcaacgataagcacgttgaggtcatgattagacagatgctgcgcaaaatccgcatc
attgatgccggtgatactaacctgctgcctggctcctttgcggatatccatgaatacgaa
tctgcgaataaggaagtaatcctgtccggcaaagaaccggctgttgcgaagcctgtactg
ctcggtattacgaaggcatcgttggaaacagactccttcttgtccgcggcatcgttccaa
gagacgacgcgcgtgctgaccgacgccgccatcaaaggcaaggtcgaccagctgctcggc
ctcaaggagaatgttattatcggtaagctgattcctgccggaacgggcatgaaccgctac
cgcaatgtcaaattggtcaatccggaagaagagcaaagcgaagaggaagctttggaaact
gttccggctgaataa
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