Paenibacillus durus: PDUR_24970
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Entry
PDUR_24970 CDS
T03297
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
pdu
Paenibacillus durus
Pathway
pdu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PDUR_24970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdu03400
]
PDUR_24970
DNA repair and recombination proteins [BR:
pdu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PDUR_24970
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PDUR_24970
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
UvrD-helicase
AAA_30
AAA_19
AAA_7
AAA_22
TrwB_AAD_bind
AAA_25
AAA_5
DUF1995
Arg_decarbox_C
DUF87
DnaB_C
fvmX5
Motif
Other DBs
NCBI-ProteinID:
AIQ14766
UniProt:
A0A089HRV2
LinkDB
All DBs
Position
complement(5432790..5434781)
Genome browser
AA seq
663 aa
AA seq
DB search
MNDIIVSTKTFELESEYSPQGDQPRAIGELVEGLRQSKKHQTLLGATGTGKTFTIAQMIA
KVNRPTLVIAHNKTLAAQLASEFKDFFPHNSVDYFVSYYDYYQPEAYIPSSDTYIEKDSS
INEEIDKLRHSATSSLFERRDVIIVASVSCIYGLGSPQEYGSLLLSLRVGMEKPRNQILS
RLVDIQYQRNDINFVRGTFRVRGDVIEIFPASQAEHAIRVELFGDEIERITEIDVLTGEL
IGEREHVAIFPASHFVTQEETMRVALVNIERELEERLAVLRDAGKLLEAQRLEQRTRYDI
EMMKEVGFCSGIENYSGPLTFRERGATPYTLLDYFPDDMLIVIDESHVTLPQIRAMYNGD
QARKTVLVEHGFRLPSALDNRPLRFEEFEDKVKQIVYVSATPGPYELEHCDEMVEQIIRP
TGLLDPIIEVRPTEGQIDDLIGEIRERIERDERVLVTTLTKKMAEDLTDYLKEIGIKVRY
LHSDIKTLERIAILRDLRLGTFHVLVGINLLREGLDLPEVSLVSILDADKEGFLRSERSL
IQTIGRAARNSEGKVIMYGDNITDSMDKAITETQRRRSIQIAYNEQHGITPQTIRKKVRD
VIEATKVAESKADYLTGAAGKMSKKERQSLMQRLEAEMKEAAKNLQFERAAELRDALLEL
RAE
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatattatcgtcagtacgaagaccttcgagctggagtccgagtactcaccccag
ggcgatcagccccgcgccatcggagaattggtagaaggtttgcggcagagcaagaagcat
cagacgctgctgggagcgacgggcacgggcaagacgtttaccatagcgcagatgatcgcc
aaggtgaaccggccgacgctggtgatcgcgcacaataagacgctggctgctcaactggcg
agcgaatttaaggatttttttccgcataactcggtcgattatttcgtgagttattacgac
tattaccagccggaggcttacatcccttcttcggatacttatattgagaaggattccagc
atcaacgaggaaattgataagctccgccactcggcgacgagctcgctgttcgaacgcagg
gatgtcattatcgttgcgagcgtatcctgcatttatggtctcggttcgccgcaggaatac
ggcagcctcctgctatcgctgcgagtaggaatggagaagccccggaaccaaattttaagc
cggctggtagatatccagtatcagcgcaacgacatcaatttcgtgcggggaacgttccgc
gtgcgcggcgatgtgatcgagatcttccccgcttcgcaagccgagcatgccattcgcgtc
gaactgttcggcgacgaaatcgagcggattaccgagatcgatgtgctgaccggggaactg
atcggggagcgggagcatgtcgccatctttccggcttcccactttgttacgcaggaagag
acgatgcgcgttgctctggtcaacatcgagcgggaactggaagaacgtctggccgtcctg
cgtgacgccggcaagctgctggaagcccagcggctggagcagcggacgcggtacgacatt
gagatgatgaaggaggttggcttctgctccggcatcgagaactactccggtcctcttacc
ttccgcgagcgcggtgccactccctacacgctgctggattattttccggacgacatgctg
attgttattgatgagtctcatgtgacacttccccaaatccgggcgatgtacaacggcgac
caggcgcgtaagaccgtgcttgtagagcacggattccgtcttccttctgctctagacaac
cggccgctaaggttcgaggagttcgaggataaggtgaagcagatcgtttatgtctccgca
acacccggtccctatgagctggagcactgcgatgagatggtggaacagattatccggccg
accggcctgctggaccccatcatcgaggtgcgtccgacagaagggcagatcgacgatttg
atcggcgaaatccgcgagcggatcgaacgcgacgagcgtgtgttggttacgacgctgacg
aagaagatggcggaggatcttaccgattatctcaaggaaatcggcattaaggttcgttac
ctgcattcggacatcaagacgctggaacggatagcgatcctgcgcgatctgcggctcggt
acgtttcacgtactcgtgggtattaacttgttaagagaagggcttgatctgccggaagta
tcgcttgtctcaatactcgatgccgataaggaaggcttcctccgttccgagcgttcgctg
atccagacgatcggccgcgccgcgcgcaactcggagggcaaggtaattatgtacggagac
aacattaccgattccatggacaaggcgattaccgagacccagcggcgccggtccatccag
atcgcctacaacgagcagcacggcattacaccgcagacgatccgcaagaaagtccgagac
gtcatagaggcgacgaaggtagccgaatcgaaagccgattacttaaccggtgctgccggc
aagatgagcaagaaagaacgtcagagcctgatgcagcggcttgaggccgaaatgaaggaa
gccgcgaagaatctccagttcgaacgcgccgccgagctgcgcgacgccttgctggagctg
cgggcagagtaa
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integrated database retrieval system
