KEGG   Prunus dulcis (almond): 117613927
Entry
117613927         CDS       T07328                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
pdul  Prunus dulcis (almond)
Brite
KEGG Orthology (KO) [BR:pdul00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pdul03009]
    117613927
Ribosome biogenesis [BR:pdul03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    117613927
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 EIF3I Beta-prop_EML NBCH_WD40 Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd Beta-prop_IFT140_1st WDR90_beta-prop_4th ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_IP5PC_F Beta-prop_DCAF4 Beta-prop_RIG_2nd Beta-prop_IFT122_1st Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_VPS8 Beta-prop_WDR75_2nd Beta-prop_SPT8 Beta-prop_WDR75_1st Beta-prop_LRRK2 Beta-prop_WDR19_1st Beta-prop_Nup120_160 WDR54 Vps54_N Beta-prop_WDR19_2nd ATP-synt_ab_Xtn WD_LRWD1 Beta-prop_SCAP
Other DBs
NCBI-GeneID: 117613927
NCBI-ProteinID: XP_034198434
LinkDB
Position
1:33823476..33826955
AA seq 442 aa
MDVVVASSSIEAGIGCWDLHTGAEQLRYKLCASPPHGLVCVGQRFLASSQLREPSASGSV
QYWSWSKPQVDVKSFPAEQIKPLAANSEGTYIVGGGLSGNIYLWEVASGRLLKKWHAHYR
AVSCLVFSDDDSLLISGSEDGGIRVWSLLLIFDDFRRQQRSQLYEHDFTGHALCVTDVVT
GYGGGNAIIVSASLDRRCKVWSISKGKLLRNIVFPTIVDAIALDPGEHVFFAGGRDGKIY
VAALNAESTSDSKHGLHIINCFSNHSNTVTCLVYSISGNCLISGSEDGVVRVWDAKSHNI
VRVFKHAKGPVNNILVIRQQLSQMNSQSSSRRHGSSLPPPLEKYPIAEDPTDLMAVIGRQ
ATCSNSTEALYLRSDVINGQIKELQQQGSASAEMEIERLKHDYERSIQMVQQWKKMYDNL
HQFCVNELLDGDQVGIPNGNAA
NT seq 1329 nt   +upstreamnt  +downstreamnt
atggatgtggtggtggcttcgtcgtcgatcgaagcaggcatcggctgctgggacctacac
accggcgccgagcagctccgctacaagctctgcgcctctccgcctcacggccttgtctgc
gtcggtcaacggttcctagcctcgtctcagctccgcgagccctccgcctccggctctgtc
cagtactggtcttggtctaagcctcaagttgatgttaagagcttcccagcagaacaaatc
aagccgctcgctgctaacagtgagggcacgtatattgttggcggaggtttatctgggaat
atctatttgtgggaggttgctagtggtagactgcttaagaaatggcatgctcactacaga
gctgtcagttgcttggtattttcagatgatgactctcttctaatttcggggtcggaggat
ggaggcattagagtttggtcccttttattaatatttgatgattttcgaaggcaacagcga
agccaactatacgagcatgattttacagggcacgctctatgtgtaacagatgtcgtcaca
ggatacggtggaggcaatgccattatcgtgtctgcgtcactggatcgcagatgtaaggtt
tggagtatatcaaaagggaaactattgagaaatattgttttccccacaatagttgatgca
attgcactggatcctggtgaacatgtcttctttgccggtggtagagatggcaagatatac
gttgctgcacttaatgctgaaagcacatctgacagcaagcatgggttgcatatcatcaat
tgtttctcaaatcacagcaatactgtaacttgcttagtgtacagtatttctggaaattgt
ttgatttctggatcggaggatggcgtggttcgagtttgggatgctaaatctcataacatc
gtccgtgtgttcaaacatgcaaaaggtccagtgaacaatattctagtcattagacaacaa
ctttctcagatgaattcgcaatcttcctccagaaggcatggttcatcattgccacctcca
ctggaaaagtatccaatagctgaagacccaacagaccttatggctgtcattggtcgccag
gctacatgcagtaattctacagaagcattgtacctcaggtctgatgtgattaatggccaa
atcaaagagcttcagcaacaaggttctgcctcagccgaaatggagatcgagagactaaag
catgattacgaaagatcaatacaaatggttcagcagtggaagaaaatgtacgacaacttg
catcagttctgtgtaaatgagcttttggatggtgatcaagtaggaatcccaaatggaaat
gccgcctga

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