Prunus dulcis (almond): 117614187
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Entry
117614187 CDS
T07328
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DEAH13-like
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
pdul
Prunus dulcis (almond)
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pdul03009
]
117614187
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117614187
Ribosome biogenesis [BR:
pdul03009
]
Eukaryotic type
90S particles
Helicases
117614187
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DHX37_C
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
nSTAND3
ATPase
HTH_ABP1_N
Motif
Other DBs
NCBI-GeneID:
117614187
NCBI-ProteinID:
XP_034198798
LinkDB
All DBs
Position
1:17296300..17304710
Genome browser
AA seq
1332 aa
AA seq
DB search
MRSKLDFPMENCAQHMDLSGDSNTLILPAKRRNKRKGTNQDCEKLNKRKATMISKSQQRK
LKKLEEEKEKSVSISKSIEALEKYKLPEGAHSLLQSSKNIGKVESKKEKRRNAVLFSKAG
FGVPLTDQPFKKIDSESESESEPELEKTQSRSDLWKNDQVQSKIVPAEIQKNTFISLDSS
QGLICGRGLGVNGGTAADSPYKNAISNKHDMSLREHINILPTSSVNDDSQSMKMDKVKET
PNVNFSRTSKLSNSPTPRSLIAPTIVHVSRPEEVENARKDLPIVMMEQEIMEAVNDHSTV
IICGETGCGKTTQVPQFLFEAGFGSSFSCVQSGIIGVTQPRRVAVLATAKRVAYELGLHL
GKEVGFQVRYDKRIGESCSIKFMTDGILLRELQNDFLLKRYSVIILDEAHERSLNTDILI
GMLSRVIRAREEKFAEQQREVLSGRTIITGQQICLLKLVLMSATXRVEDFMSGRKLFRNP
PPVIEVPTRQFPVTIYFSSRTKEEDYIGQACKKALAIHKRLPRGGVLVFVTGQRKVEYLC
RKLHRVSKEQFKKTTEGDIRSDVTEVSERSSTEEIDMKEINEAFEVHGXLAGHQTNRFSY
NDEDQFDIDDDEXDDSYDSETENELEFIGDHGDSLIQASLEIDGDVENLLGEEGGITALK
LEXAKTSSNFNSDEKQPFSVTPNACYTXSNPSMGKKSGVEENTSPGTFHVPPPYAMLHVK
DQLHVVEEVREGERLVVVATNVAETSLTIPGIKYVVDTGREKVKSYNSSNGMETYEVQWI
SKASAAQRAGRAGRTGPGYCYRLYSSAAFSNIFPDFSPAEISKVPVDGVVLYMKSMNIDK
VSNFPFPTPPEGAALDEAERCLKILQALDSNGRLTPLGKAMADFPMSPRHSRMLLTVIQV
MCKEKSYSRANLVLAYAVAAAAALSLSNPFVRQFEDSHTKSQDLDGDGNSSGTVNIEVMD
KQEKLRRKKLKETVKMFREKFSNPSSDALSVAYALQCYELSESPVEFCNVNALHPKTMEE
MSKLRKQLLQLVFNQSGVSGGEKDFSWIFGSLKDVENVWRVSHDKNPLLLYEEELLGQAI
CAGWADRVAKRIRGSSGLSLGDKKVHAVRYQACMVKEIVFLHRWSSVSNSAPEFLVYSEL
IQTRRPYMHGVTSVKSEWLVEYARSLCTFSAPPTDTKPYYEPLTDQVLHYVIPAFGPHLW
ELPSHSIPISNYAFRVAVFAYALLEGQVLPCLRSVRKYMAAPPASVLRPEAAGQRRVGSL
LAKLNRKKIDSCAMLREVWKENPKELHPEIMDWFQEGFHNNFKTVWSHMLSEVILEPQDR
FLKTSKRVKVKK
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgaggagcaaactggactttcccatggagaattgtgcacagcatatggacttgagtggt
gatagcaacaccctcatcttgccagcaaagagaaggaacaaaaggaagggcaccaatcag
gattgtgaaaaactcaataaaagaaaagcaacaatgattagcaaatcccagcaaaggaaa
ctgaagaagttggaggaggagaaggaaaaatctgtttccatatccaaaagcattgaggcc
ttagagaaatataagcttccagagggtgcacattctcttttgcagtcatcaaagaatatt
ggcaaggttgagtctaaaaaggaaaaacgtaggaatgctgtactattctccaaagctggc
tttggtgttccccttactgaccaaccgtttaagaagatagatagtgaaagtgaaagtgaa
agtgaacctgagttagaaaaaactcaatcaaggtcggatctttggaagaatgatcaggtg
caatcaaagatagtcccagcagaaatccaaaagaacacatttatttctttggactcctct
cagggtctaatctgtggcagaggacttggcgtgaatggtggaactgctgctgactcacca
tataaaaatgctattagcaacaaacatgacatgtctttgcgagaacacataaacattttg
cccacttcaagtgtgaatgatgatagtcaaagcatgaagatggacaaagtaaaagaaaca
ccaaatgtaaatttcagcaggacgagtaaattatcaaattctcctacaccgaggtctcta
atcgccccaactatagtgcatgtatcaaggcctgaggaagttgaaaatgcaaggaaggat
cttccaatagtaatgatggagcaggagataatggaggctgttaatgaccattccactgtt
attatatgtggagagactgggtgtggtaaaaccacccaagttccacagtttctttttgaa
gccggctttggttcaagcttctcttgtgtccaaagtggtataattggtgttactcaacct
cgtcgtgttgcagtccttgcgactgctaagcgagtggcatatgagcttggtctacattta
ggtaaagaggtcgggtttcaagttaggtatgacaaaaggatcggtgaaagttgctccatc
aagttcatgacagatggaatattactacgggaacttcagaatgactttttgctgaagcga
tactctgtcataattcttgacgaggctcatgagcggagcttgaacactgacattcttatc
ggaatgctttcacgtgtaattcgtgctcgcgaggaaaaatttgcagagcagcaacgggag
gtgctttcgggaagaactataattactgggcaacagatttgtcttttgaagcttgttctg
atgagtgccactntgcgagtggaggacttcatgtctggtagaaagctgtttcgcaatccc
ccgccagttatagaagttcccaccagacaatttcctgtaaccatttacttttcaagcaga
actaaggaagaggattatattgggcaagcatgtaaaaaagccttggcaattcacaagagg
ctgccacgcgggggcgtacttgtgttcgtcactgggcagaggaaagtagagtatttgtgt
cgaaagctacatagagtttcaaaggaacagtttaaaaaaacaactgaaggggatattagg
agtgatgtcactgaagtttctgaaagaagttctactgaggaaatagacatgaaggagatc
aatgaagcatttgaggttcatgganatttggctggccatcaaactaacagatttagctat
aatgatgaagatcagtttgatatagatgacgatgagtaggatgattcatatgattcagaa
acagagaatgaactggaatttattggtgaccatggcgactcattgatccaagctagtctg
gaaattgatggtgatgtggaaaatcttttaggagaggaaggaggcattactgcactgaag
cttgagnacgcaaaaacttcatctaacttcaattctgatgagaaacaaccattttcagtt
actccaaatgcttgctacaccnaatccaatcctagcatgggaaaaaagagtggagttgaa
gagaatacttctccaggtacatttcatgttcctcctccttatgccatgctgcatgtgaaa
gatcagcttcatgtcgttgaagaagtcagggaaggagaacggctcgttgttgtggccacc
aatgtggctgaaacatctttaactatacctgggataaagtatgttgtcgatactggaaga
gagaaagtgaagagctacaattcctcaaatggcatggaaacatatgaagtacagtggata
agtaaggcatcagctgctcaacgtgcaggaagagctggaagaactgggcctggatactgt
taccgtctgtattcttctgcagcatttagtaacatatttcctgacttttctccggctgaa
atatctaaagtccctgttgatggtgttgtactttacatgaaatccatgaatattgataag
gtatccaattttccatttccaactcctccagagggtgctgccttggatgaagctgagcgt
tgcttaaagatccttcaagcacttgacagcaatggaagactgacacctttagggaaggcc
atggctgatttccccatgagtcctcgccactctaggatgctgcttacagttattcaagta
atgtgtaaggagaagagttactctagggctaatttagtgctagcatacgcagttgcagca
gcagctgctttgagtttgtcaaatccttttgtcaggcagtttgaagatagtcacacaaaa
agccaagacttagatggggacggaaattccagtggcactgtgaacattgaagttatggac
aagcaagagaagttgagaaggaagaaactaaaagaaactgtaaaaatgtttcgtgaaaaa
ttttctaatcccagcagtgatgctctgtctgtagcttatgctttgcagtgctatgaactt
tcagagagcccagtggaattctgtaatgtcaatgctctacacccgaaaacaatggaggaa
atgtccaagctgagaaagcaactactccaacttgtctttaaccaaagtggtgtttctggt
ggggagaaggatttttcatggatttttggaagtttgaaagatgtagaaaatgtttggagg
gtttcccatgataagaaccctctattattgtatgaggaagagctcctaggccaagctatc
tgcgctggttgggcagatagggttgccaaacgcattagaggaagttccgggttatcttta
ggagataaaaaagttcatgcagttcggtatcaagcctgcatggttaaagagattgtgttc
ctccaccgttggtcatctgtttctaattcagcccctgagtttttggtatacagcgagttg
atacagacaagacgtccgtacatgcacggtgttactagtgtgaaatcagaatggcttgtt
gagtatgctcggtctctgtgcactttctccgcacccccaacagataccaaaccttactat
gagcctctaactgaccaagtattacattatgtcattccagcctttggtcctcatttatgg
gagcttccatcacatagtattccaattagtaattatgcatttcgagtggcagtttttgct
tatgctttgcttgaaggccaggttttgccatgtttaagatctgttcgtaagtatatggca
gcccctcctgctagtgttttaaggccagaggcagcaggtcaaagacgggttgggagtctt
ttggctaagctgaatagaaaaaagatagacagctgtgctatgttaagagaggtctggaag
gagaatcccaaggaattgcatccagaaatcatggactggtttcaggagggtttccacaat
aatttcaaaactgtttggtcacatatgcttagtgaagtaattttagagccccaagatcga
ttcctgaagacatcaaagagagttaaagtgaaaaaataa
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