Prunus dulcis (almond): 117614501
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Entry
117614501 CDS
T07328
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117614501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdul03021
]
117614501
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117614501
Transcription machinery [BR:
pdul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117614501
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117614501
U7-dependent histone pre-mRNA processing factors
117614501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
RMMBL
Lactamase_B_6
Beta_lactamase3
Mur_ligase_C
Lactamase_B
LPD3
Motif
Other DBs
NCBI-GeneID:
117614501
NCBI-ProteinID:
XP_034199225
LinkDB
All DBs
Position
1:42923350..42933559
Genome browser
AA seq
644 aa
AA seq
DB search
MASMVQPSPLKLREASASREDDKLIIIPLGAGNEVGRSCVYMSYKGKTVLTTFKGRVFMT
YATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINASMDKIEVIDFHQTVEVEGIRFWCYTA
GHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRH
IREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELQNIPIYYASPLAK
RCLSVYETYTLSMNDRIRNAKSNPFVFKYISPLKSIENFKDVGPSVVMASPSGLQIGLSR
QLFDMWCSDKKNACVIPGYVVEGTLAKTIINEPKEVTLMNGLSAPLNMQVHYISFSAHAD
SVQTTAFLEELRPPNIILVHGEANEMGRLKQKLMTQFADRNTKILTPKNCQSVEMYFNSQ
KMAKAIGRLAEKTPEVGESVGGLLVKKGFSYQIMASDDLHVFSQLCTANVTQRITIPFAS
GFTVIKHRLSQIYESVESSVDEESGVPTLRVHDRVTVKQDTDKHISLHWSSDPISDMVSD
SIVALILNINREVPKVVVESEYVKTEEENRKKAEKVIHALLVSLFGDVKPGGNGKLVIRV
DGNVAKLDKQSVDVESENEGLKEKVKVAFRRIQSAVKPIPLSAT
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggcttccatggtacaaccctcacctctgaagctgcgggaggcttctgcatcaagagaa
gatgataaacttatcataattcctttaggggctggtaatgaagttggccggtcttgtgtg
tacatgtcctacaaagggaaaactgtgttgaccacattcaaaggccgagtctttatgact
tatgcaacaaaggccatctacaagttgcttttgacggattatgtgaaagtgagcaaagtt
tccgttgaagatatgttgtttgatgagcaggacataaatgcctcaatggataaaattgag
gttattgatttccatcaaacagtagaggtggagggcattcgattttggtgctatactgcc
ggtcatgtccttggtgctgctatgtttatggttgatattgcgggtgttagagtcctctac
actggtgattattcacgtgaagaagaccggcatctccgtgctgctgagaccccacagttc
tcccctgatgtatgcattattgaatccacatatggtgtccagcaccatcaacctcggcac
atcagagagaagcgattcactgatgttatccattcaacaatctctcaagggggtcgtgtc
ttaattcctgcttttgcacttggccgtgctcaagaacttctcctgatccttgatgagtat
tgggcaaaccatcctgagctccaaaatattcctatttattatgcttccccacttgcaaaa
agatgtttatctgtatatgagacatacaccctttccatgaacgataggatccgcaatgcg
aagtcaaatccctttgtattcaagtacatatcaccactaaagagcattgaaaatttcaaa
gatgtaggcccgtcagtggtgatggcaagccctagtggtcttcagattgggctgtcaagg
cagctatttgatatgtggtgctctgataagaaaaatgcttgtgttattccaggttatgtg
gttgaagggacactagctaagacaatcatcaatgaaccgaaggaggtaactcttatgaat
ggactcagtgctcctctcaacatgcaggtccattacatttcattctctgctcatgcagac
tctgttcagacaactgcatttttggaagagctgaggccccctaatataatccttgttcat
ggagaagctaatgagatggggaggctcaaacagaagctgatgacccagtttgctgatcgt
aacaccaaaatcctcaccccaaagaattgccagtccgttgaaatgtattttaactcgcag
aaaatggcaaaagctattggaaggcttgctgagaagacccctgaagttggtgaaagtgtc
ggcggtttactggttaaaaaaggctttagttatcaaataatggcttctgatgatcttcat
gtcttctcacagctgtgcacagcaaatgtcacccaacggattactatcccatttgctagt
ggctttactgtgataaaacaccggcttagccaaatatatgagagtgtagagtcttcagtg
gatgaggaatctggagtgccaacattgcgagtgcatgatcgggtgacggtgaagcaggat
acagataaacacatttcactacattggtcgtcagatcctataagtgacatggtgtcagac
tccattgtggctcttattttgaatatcaaccgagaagtccccaaggtagttgttgaatca
gagtacgtaaaaactgaggaagagaacaggaagaaggcggaaaaggtcattcatgcactt
cttgtatcactctttggggatgtgaagcctggaggaaatgggaaactagtgattagggtt
gatgggaatgtggcaaagcttgataaacagagtgtggatgttgagagtgaaaatgaaggt
ctcaaggaaaaagtaaaggtggcatttcgtcgaatccaaagtgccgtgaagccaatccct
ctctctgcaacttag
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