Prunus dulcis (almond): 117614614
Help
Entry
117614614 CDS
T07328
Name
(RefSeq) uncharacterized protein LOC117614614 isoform X1
KO
K06100
symplekin
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117614614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdul03021
]
117614614
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117614614
Transcription machinery [BR:
pdul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117614614
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
117614614
U7-dependent histone pre-mRNA processing factors
117614614
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
117614614
NCBI-ProteinID:
XP_034199375
LinkDB
All DBs
Position
1:40557673..40578580
Genome browser
AA seq
1406 aa
AA seq
DB search
MAGAAPSDRALSLLATVNNHGDLAVKLSSLKQAKDILLSIHPSVAAELFPYLIELQSSPE
TLVRLSLIEVVEEIGLKAMEESSVLMSVLLEFLKDSDSIVARQSIVSGTNLFVSVLEEMT
LQVSSLSLCLFVHLRTHASHTCVHKFEGVYKHRTCNDACTFFLLRSTDSTAHMQILAQKK
KRKEKHFHRRGKVEIWLEELWSWMAKFKDAVFTIALEPGSVGTKLLALKFLETYVLLFTS
DANGSEKPVVEDTTASKKAFNVSWLVGGHPILDPYILMSEANRTVGILLNLLRSAGSLPG
CVTIAIVNCLAAIARKRLVHYNTILSALLDFDPNFEIVKGHHAASIQYSLRTAFLGFLRC
TNPVIVESRDRLLRALRAMNAGDAADQVIRQVEKMLRNAERVSRDARLGKDDQQSSQLPV
SGDLLKRRLTPLDTEEASNNHEMPSKRIRYGPDSYSTLPVQMNASGRDTTSVNGVSSELP
VLDGELTPVEQMIAVIGALLGEGERGGESLEILISNIHPDLLADIVITNMRHLPKIPPPL
TRLGNFPVPRQISSLSSSAQVVAGSPTSSVQSPVLTEQVPFSSATVTSLTVSDVSNVNSL
PTDSKRDPRRDPRRLDPRSAAASAGLASTPMEDTTAMQSDFDGSMSLNKLNLLPNVTIVE
TPLATPMLQTESDEKTFDSQLVSGSGQLTPKEEVLDGPVEIDPASKLGLSSDLTDSPVQT
VDEDLIATKLSDIEGKDEDEDLDTSSFLESDQHSPVLSNTSASEDTYQDFPQLPIYVELT
QEQERSVGKLAIERIIESYKYLHGADYSQMRLALLARLVAQIDADDEIVVLLHKHILVDY
QQQKGHELVLHVLYHLHALTISDSVESCSFATAVYEKFLLEVAKSLLESFPASDKSFSRL
LGEVPILPDSTLKLLDDLCNSDVIDKHGKDIRDVERVTQGLGAVWSLILGRPHYRQSCLD
ITLKCAVHSQDEIRAKAIRLVANKLYQLSYISEIIEKFATNMLLSAVEQSPSGTEHAQSG
PTGQRAERMLESQETSISDFEVSESGNSENDSSRKDQALSTMSFPEVQRLISLFFSLCIK
KPILIQLVFNTYGHAPKAVKQAFHRHIPILIRALGSSYSELLNIISDPPQGSENLLMLVL
QILTQETSPSSDLIATVKHLYETKLKDVTILIPMLSALSKNEVLPIFPRLVALPLEKFQT
ALAHILQGSAHTGPALTPAEVLVSIHGIVPEKDGLALKKITDACSACFEQRTVFTQQVLA
KALNQMVDQTPLPLLFMRTVIQAIDAFPSLVDFVMEILSKLVSKQVWRMPKLWVGFLKCA
SQTQPHSFRVLLQLPPPQLESALNKYANLRGPIAAYASQPSVKASLPRPTLAILGLANET
HLQQPHLPSSFHPTDTNSSVHGATPT
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcagctcccagcgaccgagctctttctctcctcgccacggtcaacaatcat
ggcgatttggccgtcaagctctcgtctttaaagcaggccaaagatatcttattatccatc
catccatctgtggctgccgagctcttcccctacctgatcgagctccagtcctcccccgaa
acccttgtccggttatctctcatcgaggtcgttgaggagattggattgaaagcaatggag
gaatcttctgtactaatgtctgtcttattggaatttttgaaggacagtgactctattgtt
gcacggcaatccatagttagtggaacaaatttatttgttagtgtcttggaggagatgaca
ttgcaggtctcctctctctctctctgtctgtttgtccatctccgtacacacgcatctcat
acatgtgtgcacaaatttgaaggcgtatacaaacatagaacatgcaatgacgcatgcact
ttttttttgttgaggtcaacagactcaacagctcatatgcagatattagcccaaaaaaag
aaaagaaaagagaaacactttcaccggcgaggtaaagtcgagatatggcttgaagaactt
tggtcgtggatggccaagtttaaggatgcggttttcacaattgcattagagcctggttct
gtagggacgaagttgcttgcattgaaattcttggaaacatatgttttgctattcacttct
gacgccaatggctctgaaaaacctgttgtagaagatacaacagcaagtaaaaaggctttt
aatgtttcgtggctggttggtggacaccctattcttgacccatatatactcatgtcagaa
gcaaataggactgttggcattctattaaatttgttgcggtcggctggtagtctccctggt
tgcgtgacaattgccattgtaaattgtcttgcagccatagcaaggaaaaggctggttcat
tacaataccattctttctgcactattagattttgatccaaactttgagatagtgaaagga
caccatgctgccagcatccagtattctttaagaactgcattcttgggattccttaggtgc
actaacccagtcattgtagagtcaagagatagactgcttagagctctacgagctatgaat
gctggtgatgcggctgatcaagtgatccgtcaagttgaaaaaatgttaagaaatgctgag
cgtgtttcacgtgatgctcggttgggcaaggatgatcaacaatcaagccagttgcctgtt
tcgggggacctgctaaagagaagacttactcctctggatactgaggaggcatctaataat
cacgagatgccttccaagcgaattcgttatggtcctgactcctattcaactttgccagtt
caaatgaatgcttctgggcgggacaccacttctgtcaatggagtgtcctctgagcttcct
gtattagatggtgagttgacccctgtggagcaaatgattgctgtaatcggtgctttgctt
ggtgagggagaaagaggtggtgaatcacttgaaattcttatttcaaatatccatcccgat
ctgctggccgatattgttataactaatatgaggcacttgcctaagatacccccacccttg
acaaggctcgggaattttccagttccacggcagataagttctttaagtagttcggcacaa
gttgttgcaggctccccaacatcttctgtgcagtctccagttctcactgaacaagtgcct
ttctcttcagcaactgtaaccagtttaacagtttctgatgtgtccaatgtgaatagtctt
cccactgattccaagcgagatccgcgaagggatcctcgtcgcttggatccgcgaagtgca
gcagcttctgctggactggcatccacacccatggaggatactactgctatgcagtctgac
tttgatggctcaatgtctttaaataagcttaatctgctccccaatgtgaccattgtcgaa
actcctttagcaactcccatgctccaaacggaaagtgatgaaaagacttttgatagccaa
ttggtttctggaagtggccaactaactcctaaggaggaggttctggatggacctgttgaa
attgaccctgcttcgaagctcggtttatcttccgatctcacagattctcccgtgcaaaca
gttgatgaggacctgattgcaacgaagctttcagatattgaagggaaagatgaggatgag
gaccttgatacctcatcctttttagaatctgatcagcattctccagttctttcaaacacg
tctgcatccgaagatacttatcaagattttcctcagcttcccatttatgttgagctgacc
caagaacaggaacgaagtgtgggaaaattagcaattgaacgaattattgagtcatacaag
tatttgcatggtgcagattacagtcagatgcgcttggcattacttgctcgattggttgct
cagattgatgcggatgatgaaattgttgtactgctgcataagcatatccttgtggattac
caacagcaaaagggccatgagctagtattgcatgtcttgtaccatctgcatgctttgacg
atatctgattcagttgaaagctgttcatttgctactgctgtatatgagaagttcctcttg
gaagtggctaagtctttgctggagtcctttccagcctcagacaagtcgtttagtagactt
cttggtgaagttccaattctgcccgactcaactttgaaactgttagatgatctatgcaat
tctgatgttattgataaacatggaaaagatattcgtgacgttgagcgtgtcactcagggc
cttggtgctgtttggagtttaattttggggaggccacattatcgacaaagctgcttagac
atcactttgaagtgtgctgttcattcacaagatgagatcagagccaaagctatccggctg
gtggcaaacaaactttaccagttgagttacatatcggaaattattgagaaatttgctaca
aatatgttgctgtctgctgttgaacaatctccatctggtacagagcatgcacaatcgggg
cccactgggcaaagagcagaacggatgcttgaaagtcaagaaacatctattagtgatttt
gaagtttcagagtctggaaattctgaaaatgattcctcaagaaaggaccaagcactatca
accatgtcatttcctgaagttcaacgactcatttctttgtttttttctttatgtataaag
aaacctattcttattcaacttgtatttaatacttatggacatgccccgaaagctgtaaag
caggcttttcatcgccatattcccattcttataagggccttagggtcatcttattccgaa
ttgttaaatattatatctgatccaccacaaggaagtgagaatcttttgatgctggttctg
caaatattgacccaggagacatcaccttcgtctgatctgatagccaccgttaagcatttg
tatgaaactaaattaaaggatgtcacaattctcattccaatgctgtctgcactttcaaaa
aatgaggttttacctatattccctcggcttgtcgctcttccattagaaaaattccagaca
gcacttgctcacatactacagggctcagctcatacaggtccagctttaacgcctgcggaa
gttttggtttccatccatggaattgttcccgagaaagatggtctcgcacttaagaagata
acagatgcttgctcagcttgtttcgagcaacgcacagttttcacacagcaagtcttggca
aaggccctgaatcagatggttgatcaaactcctcttcctcttctctttatgcggacagtt
attcaggcaattgatgcttttccttcactggttgattttgtaatggaaatactttccaaa
cttgtgagtaaacaggtgtggagaatgccaaaactgtgggttggcttcttgaaatgtgcg
tctcagacacagccacattctttccgtgtattgttacagttaccacctccacaacttgaa
agtgctttgaacaaatatgcgaacctcagaggtcccattgctgcttatgctagccagcct
agtgtaaaagcttcactccctagaccgacacttgcaattcttggtcttgcaaatgaaaca
catttacagcaaccgcatttgccatcatcgtttcaccctacagacacgaattcatcagtt
catggagcaactccgacgtga
DBGET
integrated database retrieval system
