KEGG   Prunus dulcis (almond): 117615178
Entry
117615178         CDS       T07328                                 
Name
(RefSeq) pre-mRNA-processing factor 19-like isoform X1
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
pdul  Prunus dulcis (almond)
Pathway
pdul03040  Spliceosome
pdul04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pdul00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117615178
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    117615178
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pdul03041]
    117615178
   04121 Ubiquitin system [BR:pdul04121]
    117615178
   03400 DNA repair and recombination proteins [BR:pdul03400]
    117615178
Enzymes [BR:pdul01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     117615178
Spliceosome [BR:pdul03041]
 Complex B
  Other components
   Prp19 complex
    117615178
 Complex C
   Prp19-CDC5 complex
    117615178
Ubiquitin system [BR:pdul04121]
 Ubiquitin ligases (E3)
  U-box type E3
   117615178
DNA repair and recombination proteins [BR:pdul03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    117615178
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 Prp19 WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_Gbeta WD40_MABP1-WDR62_2nd WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_EML Beta-prop_IFT140_1st Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_IFT122_1st eIF2A Beta-prop_HPS5 WDR90_beta-prop_4th Beta-prop_RIG_2nd WD40_like Beta-prop_WDR41 Beta-prop_DCAF12 U-box Beta-prop_Aladin Beta-prop_ACSF4 PEP5_VPS11_N zf-Nse KNTC1_N Beta-prop_VPS8 PAS_11 PUMA_CC
Other DBs
NCBI-GeneID: 117615178
NCBI-ProteinID: XP_034200096
LinkDB
Position
1:3435585..3443013
AA seq 523 aa
MNCSISGEVPEDPVVSKKSGLLFEKRLIERHISEYGKCPITGEPLTADDIVPVRTGKIVR
PRPAQAASIPGMLGMFQLEWDSLMLANFAMEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLALAERQIPMSAQSTIAANASVHSNGKPAADDQLGPGLRNVRPGISPNILDD
MTECNSVLSQQRKRRQISPTLAPVDALERYTQISSHPLHKTSKPGILSIDIHSNKNIIAT
GGVDTNAVIFDQPSGQIISTLSGHSKKVNSVKIVPRDDLLITGSADKTVRIWQGSDDGNY
NCNHVLKDHTAEVQAVTVHATNNYFVTASLDGTWCFYDLSSGLCLTQVEDPSASEGYTSL
AFHPDGLILGTGTTGGLVKIWDVKSQTNVAKFEGHVGAVTSISFSENGYFLATAASDGIK
LWDLRKLKNFRTFTPYGPDTPTNCVEFDYSGSYLAAAGSDIRVIQATSVKLDWNTIKTFP
DMSGTGKATSVKFGPDAKYIAVGSMDRNLRIFGLPGDDSAMEP
NT seq 1572 nt   +upstreamnt  +downstreamnt
atgaactgctcaatctccggcgaggtgccggaagatcctgtggtctccaagaagtctggt
ttgctcttcgagaagcgtttaatcgagagacatatctcggaatacggaaaatgcccgata
actggggaaccacttaccgctgatgatattgttccagttcgaacgggcaagattgtaagg
cccagacctgcacaagctgctagtatccctggcatgctcggaatgttccagcttgaatgg
gatagtttgatgctagctaattttgcaatggagcaacaattgcatacagcaaggcaagag
ttgagtcatgctttgtatcagcatgatgctgcatgccgtgttattgcgagactcaaaaaa
gaaagggatgaagcaagatcattacttgctctggctgagagacaaattcccatgtcagca
caatcaacaattgcagcaaatgcctctgtccatagcaatgggaaaccagctgctgatgac
cagctgggacctggcttgaggaatgtacgccctggaatatctcccaatatcctagatgat
atgactgaatgtaattcggttctttcacagcagaggaagaggcgacagatatccccaacg
ttggctccagttgatgctttggagaggtatactcagatatctagccatccccttcataaa
acaagcaaacctggaattttatcgattgatattcattctaacaagaacataattgcaact
ggaggggttgatacaaatgcagtaatctttgatcaaccatcaggacaaatcatatccact
cttagtggtcattcaaagaaggttaacagtgtcaaaattgtacctcgggatgatctgtta
ataactgggtcagcagacaagacagttcgcatatggcaaggttctgatgatgggaactat
aactgtaaccacgttttgaaggaccatactgcagaggtgcaagctgttactgtgcatgcc
acgaataactactttgtgactgcttctcttgatggtacatggtgcttttacgatctttcc
tcggggttatgtctgacacaggttgaagacccttccgcatctgagggctatacatctttg
gcgtttcatcctgatggtcttatccttggaacaggcaccactgggggccttgtgaaaatt
tgggatgttaaaagtcagacaaatgttgcgaagtttgagggacatgttggtgcagtaact
tccatctccttctctgagaatggttactttcttgcgactgcagcaagtgatggcattaag
ttgtgggatctacgcaaattgaaaaacttcaggacattcactccatatggtcctgacaca
ccaacaaactgtgttgaattcgactacagtggaagttaccttgctgctgcaggctccgat
ataagagtcatccaagctactagcgtcaaattagattggaacactataaagacttttcct
gatatgtctggcacaggtaaagcaacaagtgtcaaatttggtccagatgcaaaatatatt
gcagtaggatcgatggaccgtaaccttcgcatttttggcctgcctggcgatgatagtgca
atggagccctga

DBGET integrated database retrieval system