Prunus dulcis (almond): 117615180
Help
Entry
117615180 CDS
T07328
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117615180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdul03041
]
117615180
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117615180
Spliceosome [BR:
pdul03041
]
Complex C
Other components
Step II factors
117615180
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
nSTAND3
AAA_19
nSTAND_NTPase5
FtsK_SpoIIIE
SLFN-g3_helicase
ATPase
T2SSE
AAA_30
PhoH
DUF2532
Motif
Other DBs
NCBI-GeneID:
117615180
NCBI-ProteinID:
XP_034200099
LinkDB
All DBs
Position
1:25459897..25465683
Genome browser
AA seq
714 aa
AA seq
DB search
MAQGQGRLNSSTKSPKGNLSDGNRKLDAFSKRQTLAQHRKSLPIASVDKRLVEELQKHDT
LIIVGETGSGKTTQLPQFLYNAGFCGDGKLIGITQPRRVAAVTVAKRVAEECGVNLGEKV
GYSIRFEDMTSSSTRIKYMTDGLLLREALLDPHLSRYSVIIVDEAHERTVHTDVLLGLLK
SVQDARSKSLNNLQNTKNKKTNNDIQLKENGAQGLNFLKQYQGRTPLKLIIMSASLDARI
FSEYFGGARAVHIQGRQFPVDIFYTLHVENDYLDASLATIFQIHLEEGPGDILVFLTGQE
EIESVERLVKERLKQLPENSKKLVAVSIFSSLPSEQQMRVFAPAPPGFRKVILATNIAET
SVTISGIKYVIDPGLVKARYYDPNKGLESLVVVPISKAQALQRSGRAGREGPGKCFRLYQ
EDQFGKFEDSTKPEIKRCNLSNIILQLKALGVDDISGFDFIEKPTRSAIVKSLEQLFLLG
ALTDDCKLSNPVGRQMAGLPLDPIYSKALILASEFNCLEEMLITVAMLSVESIFYSPRDK
KEESRTTKKSFASPEGDHLTLVNVYRASNEFLEKRSGLSKEKREKAFRKWCKENFIDSRS
LRHARDIHSQIRRNVEQMGLRVASCGDDVLQFCRCLAASFFLNAALKQPEGSYRALANGE
IVSIHPSSVFFKNKPECLIFNELVETNRKYIRNTTKIDYLWLTELAPQFYAVQN
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaggtcaaggacggctgaacagctctaccaaaagcccgaaaggaaacttgtcc
gatggtaatcgcaagctcgatgccttttccaagaggcaaacgcttgcgcagcacaggaag
tctcttccaatcgcttctgtggataaacgactggttgaggagcttcagaagcacgatact
ttgattattgttggtgaaactggaagcggaaaaacaacacaattacctcagtttttgtac
aatgctgggttttgcggggatgggaaactcattgggataactcaacccaggcgtgtggct
gctgtgactgtggcaaaacgggttgctgaggaatgtggcgtaaatttgggtgaaaaggtt
ggttactccatcagatttgaggacatgacctctagttcgacaaggatcaagtacatgaca
gatggattgctactgagggaagcactgttggatccacatctctctaggtattcagtcata
attgttgatgaagctcatgagagaactgtccacactgatgtgttgctaggcttgctaaaa
agtgtacaagatgcaaggtcaaaatccctcaataacctccaaaatactaaaaacaagaaa
acaaataatgacatacaattgaaagaaaacggtgctcagggcctcaattttctcaagcaa
taccaaggaaggaccccgttgaagttaattatcatgtctgccagcttggatgcacgaatt
ttttccgagtacttcggtggtgcaagagctgttcacatccaagggcgacagtttcctgtg
gatatattttatactcttcatgttgaaaatgattatctagatgcttcgttagccaccata
tttcagattcatctggaggagggacctggtgatatacttgtattcttgacgggtcaagaa
gaaatcgaatctgtagaaagacttgtcaaagaaagacttaaacagttaccagaaaacagt
aaaaaactagtggctgtttctatattctcatctcttccttcagaacagcaaatgcgagtt
tttgcaccagcccctcctggatttcgtaaggtaatattggcaacgaatattgctgagaca
tcagtcacaatatctggaataaagtacgttatagatcctgggttagtaaaagcacgttac
tatgacccaaacaaagggttggaatctttggttgttgttccaatttcaaaagcacaagct
cttcaaaggagtgggcgtgcagggcgagaaggaccagggaagtgcttccgcctctaccaa
gaggatcaatttgggaaatttgaggattcaacaaagccagagatcaagcggtgcaacctc
tctaatatcattttgcaacttaaggctctgggtgttgatgatatcagtggatttgacttc
atagaaaagcctacaaggtcggctattgtcaaatcactagagcaattgttcctgctgggt
gctttaacagatgactgtaaattatcaaatccagttggacgccaaatggctggccttccc
ttagacccaatttattcaaaagctctaatcctagcaagtgaattcaattgcctggaagag
atgctgataactgttgcaatgctctcagtagaatctatattttatagtccccgtgacaaa
aaagaagagtcgagaactacaaagaaatcatttgcaagtccagagggagaccatctcact
ttggttaatgtatatagagcgtccaatgagttcttggaaaagagatcaggtcttagtaaa
gagaagcgtgaaaaagctttccgaaaatggtgcaaggaaaatttcattgatagtcgctcc
ctgaggcatgctcgtgacattcacagccaaattcgacgaaatgttgaacaaatgggtctt
cgtgttgcctcttgtggtgacgacgtgcttcagttttgcagatgccttgcagcttctttc
ttcctcaatgcagctttaaagcagcctgagggatcatacagggctttagcaaacggtgag
atagtgtcaatccacccatcttccgtgtttttcaagaacaaaccagagtgcctaattttc
aatgaactagtcgaaactaatcgtaaatacatccgcaacacaactaagatcgattatttg
tggttaacagagcttgctcctcaattctatgccgtgcagaattga
DBGET
integrated database retrieval system
