Prunus dulcis (almond): 117616495
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Entry
117616495 CDS
T07328
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117616495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdul03041
]
117616495
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117616495
Spliceosome [BR:
pdul03041
]
Complex C
Other components
Step II factors
117616495
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
AAA_30
ABC_tran
nSTAND_NTPase5
AAA_16
NPHP3_N
MMR_HSR1
SLFN-g3_helicase
ATPase_2
AAA_29
NAT10_TcmA_helicase
T2SSE
Sigma54_activ_2
Sigma54_activat
NB-ARC
PhoH
DAP3
Motif
Other DBs
NCBI-GeneID:
117616495
NCBI-ProteinID:
XP_034201722
LinkDB
All DBs
Position
1:21446720..21454558
Genome browser
AA seq
700 aa
AA seq
DB search
MADLPILQFEETIMKAVEENTVVVIIGETGSGKSTQLSQILHRRGYTKSGIVGVTQPRRV
AAVSVARRVSQELGVRLGDEVGYAIRFEDRTSERTRIKYLTDGVLLRESLSNPELDEYSV
VILDEAHERSLNTDILLGLMKRLVERRASNFKVLITSATLDGEKVSQFFSECPVVRVPGK
LFPVEIVYSHERPVSYLESSLATALDIHMKEGEGDVLIFMTGQDDIDKLVSKLEDRVRSL
EEGSCMDAIILPLHGSLQPEMQVRVFGPRPPNCRRFIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPSTGMYSLDVVQISKVQAHQRAGRAGRTRPGKCYRLYPSAVYEDEFLDVTIPE
IQRSSLAGSVLYLKSLDLPDIDILKFDFLDSPSPESLQDALKQLYLIDAIDENGLITRIG
KTMAELPLEPSLSRTLMEANEHGCLSQALTVAAMLSAETTLLPGRSKNTEKKRKHDYLDL
PDGSGWGDHIQLLQIYECWHQTNYDIDWCKDYQLQVRGMKFVKDVRRQLSQIMQKIAKGP
LDVQISRRWKESQQDYHNLRRALCVGYANQLAERMVYHNGYRTLGFKPQVVQVHPSSVLK
PDDEGKLPDYVVYQELIATSRPYLRTVCAVNIAWVTPILDKVNKININKLSGGIGRIEEH
TEENMSDLPKTDNVVAAVPDDHESKIQAARERFLARKGKK
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctaccaatcctccaattcgaagagacaatcatgaaagcagtagaagaaaac
acggtcgtagtgattatcggagagactggttcaggaaagagcacccaactctctcaaata
cttcacagaaggggctacaccaagtctggaatcgtcggcgtcactcagcctcgccgagtc
gccgctgtctccgttgccagacgagtttcacaggagcttggtgtccggcttggggatgaa
gttggatacgccatcagatttgaagatagaacgtcagagaggacgcgtatcaagtacctc
actgatggagttctccttcgtgaaagtctttccaatccagagctcgatgagtactctgta
gtaatacttgatgaagctcatgaaaggagcctgaacacggacatattgctgggactgatg
aaacgcttggttgaaaggcgtgcctcaaatttcaaggttctgatcacttcagcaactctt
gatggtgaaaaagtatcacaattcttttcagaatgccctgtagtgagagtcccagggaag
ttatttccagtcgaaatagtgtacagtcatgagcgtcctgtcagctatcttgagtcatct
ttagcaacagctctcgatatacatatgaaggaaggggaaggtgatgtcttaatattcatg
actgggcaggatgatatagataagttggtatctaagttagaagatagagttcgaagcctg
gaagaagggtcttgcatggatgccataatccttcctcttcatggttctttgcagcctgaa
atgcaggtacgtgtttttggacctcgacctccaaattgtaggagatttattgttgccaca
aacattgctgaaacttctttgactgttgatggtgttgtgtatgttattgattctggttat
gtgaagcaacggcagtacaacccgtcaactggcatgtattccctcgatgttgttcaaatt
agcaaggtacaagcacatcaacgtgctggacgagcaggaagaacacgtcctgggaagtgc
tatcgattatacccttctgcggtttacgaggatgagttcctggatgtaacaattcctgaa
atacaacgttcttcgcttgctggaagtgttctttatttgaaatctttggacctccctgat
attgatattctcaaatttgattttcttgattctccttcacctgagtctttacaagatgct
ctgaagcaattgtatcttatcgatgctattgatgaaaatggattgatcacaagaattgga
aaaacgatggctgagcttccactagaaccttcattgtcaaggaccttaatggaggcaaat
gagcatggttgcttatcccaggccttgactgttgctgctatgttatccgcagaaaccaca
ttgcttcctggtcgaagcaagaatactgagaagaagaggaaacatgattatttggacctt
cctgatggttctggctggggtgatcatatccagttgctacagatctatgagtgctggcat
cagactaactatgacattgattggtgcaaggattatcagttgcaggtgagagggatgaag
tttgtgaaggatgtcaggagacagctatctcagatcatgcagaaaatagcaaaaggacca
ttagatgtacagataagcagaagatggaaagaaagccaacaggattatcacaacttgagg
agggccttgtgtgtgggatatgcaaatcagctcgctgagagaatggtatatcacaatggg
tatcgaaccttaggttttaagccccaagtagtacaggtgcatccatccagtgtgctaaaa
cccgatgatgaaggaaaattgccagactatgttgtgtaccaagaactcattgcaacttcc
cgcccatacttgcgtactgtatgtgccgtaaatattgcttgggtcacacccattttggac
aaagtcaataaaataaatatcaacaagctgagtggtgggattggtcgtattgaagagcac
acagaggaaaatatgtctgatttgccaaagacagataacgttgttgcagcagttcctgat
gatcacgaaagtaaaatacaagcagctagggaacgatttcttgctcgtaaaggaaagaaa
tga
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