Prunus dulcis (almond): 117616745
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Entry
117616745 CDS
T07328
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03022
Basal transcription factors
pdul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117616745
09124 Replication and repair
03420 Nucleotide excision repair
117616745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdul03021
]
117616745
03400 DNA repair and recombination proteins [BR:
pdul03400
]
117616745
Transcription machinery [BR:
pdul03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
117616745
DNA repair and recombination proteins [BR:
pdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
117616745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
117616745
NCBI-ProteinID:
XP_034202038
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All DBs
Position
1:37724109..37729406
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AA seq
296 aa
AA seq
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MASAPSKLYADDVSLLMVLLDTNPFFWSSSSLPFSVFLSHVLTFLNSILLLNQLNQVVVI
ATGYNSCSYIYDSSTSTNQGSDNGRMPARCVNLLQKLEEFVIKDEQLIKEGLREGIASSL
LSGSLSMALCYIQRVFRSGPLHPQPRILCLQGSSDGPEQYVAIMNAIFSAQRSVVPIDSC
YMGSSNSAFLQQASYITGGVYLKPQQPNGLFQYLSTVFATDLHSRAFLQLPKSLGVDFRA
SCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQAQSDVNSTSNKKRKTPET
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgctccttcaaagctctatgctgatgatgttagccttctgatggttttgctc
gacacgaaccctttcttctggagctcatcttccctcccattctccgtgtttctctcccat
gtgcttacatttttgaactcgattttactactcaatcaactcaaccaagttgtggttatt
gctacgggatacaattcctgcagttacatctacgattcttctacctccacgaaccagggt
tctgataatggaagaatgcctgcgcggtgcgttaacttgttgcagaagctggaggaattt
gtgatcaaagacgagcaattgatcaaagaaggcttgagagaagggattgcttcttcgctg
ctatctgggtccttatcaatggctctttgttatatacagagagtttttcgatctggaccg
cttcatcctcaaccccggattttatgcttgcagggatcatcggatggacctgaacaatat
gttgcaatcatgaatgccatattttctgcacaacggtctgtggttcctatagattcttgt
tatatgggctctagcaactctgccttcctacagcaggcttcatacattactggtggtgtg
tatctgaagccccaacaaccgaatgggctgttccaatatctctcgacagtttttgcaact
gatttgcattctcgagcctttttacagcttcctaagtctcttggtgtggattttcgtgcc
tcgtgtttttgccataagaagacaatagacatgggctacatttgttccgtgtgcttgtcc
atattttgtaagcatcacaagaaatgttcaacttgtgggtcagtatttggtcaagcccag
tcagatgttaactcaacatccaacaagaaaagaaaaactccagagacataa
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