KEGG   Prunus dulcis (almond): 117616751
Entry
117616751         CDS       T07328                                 
Name
(RefSeq) replication factor C subunit 3-like
  KO
K10756  replication factor C subunit 3/5
Organism
pdul  Prunus dulcis (almond)
Pathway
pdul03030  DNA replication
pdul03410  Base excision repair
pdul03420  Nucleotide excision repair
pdul03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pdul00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117616751
   03410 Base excision repair
    117616751
   03420 Nucleotide excision repair
    117616751
   03430 Mismatch repair
    117616751
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pdul03032]
    117616751
   03036 Chromosome and associated proteins [BR:pdul03036]
    117616751
   03400 DNA repair and recombination proteins [BR:pdul03400]
    117616751
DNA replication proteins [BR:pdul03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    117616751
  DNA Replication Termination Factors
   ELG1-RFC complex
    117616751
Chromosome and associated proteins [BR:pdul03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    117616751
DNA repair and recombination proteins [BR:pdul03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     117616751
  Check point factors
   HRAD17(Rad24)-RFC complex
    117616751
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA Rad17 Sigma54_activ_2 AAA_lid_RFC1 Mg_chelatase DUF815 ABC_tran RuvB_N AAA_22 RsgA_GTPase nSTAND6 AAA_23 AAA_29 AAA_5 AAA_2 AAA_24 T2SSE AAA_16 SprT-like
Other DBs
NCBI-GeneID: 117616751
NCBI-ProteinID: XP_034202048
LinkDB
Position
1:17556916..17563357
AA seq 354 aa
MLWVDKYRPKTLDQAMVHQDIAQNLKKLVAEQDCPHLLFYGPSGSGKKTLIIALLRQIFG
PSADKVKVENRTWKVDAGSRTIDIELTTLSSTNHIELNPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGYKILVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSKVTEAIRSR
CLNVRINAPTEEQIVKVLEFIGKKEGLQLPSGFPARIAEKSNRSLRRAILSFETCRVQQY
PFTSNQAIPPMDWEEYVSEIASDIMKEQSPKRLYQVRQKLYELLLNCIPPEIILKRLLFE
LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYKAFLIAAFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgctgtgggtggacaagtacagacccaaaaccctagaccaggcgatggtccaccaagac
atcgctcaaaacctcaagaaactcgttgcagagcaggattgcccccatttgctcttttac
ggcccttctggctctggcaagaaaaccctaatcatcgcccttcttcgacagattttcggt
cccagcgccgataaggtgaaggtggaaaataggacatggaaagttgatgctggaagtaga
accattgatatagagctgactacattatcaagcacaaaccatattgaactgaaccccagt
gatgcaggctttcaggacagatatattgttcaagagataattaaagaaatggctaaaaat
agacccattgacacaaaagggaaaaagggatataaaatcttagtgctgaatgaagtcgac
aaactttctagagaagctcagcattctcttcgaagaactatggagaagtatagtgcttat
tgccggctaatactatgctgtaacagttcttcaaaggttactgaagcaatccggtcccgg
tgtctaaatgtgcgaataaatgcgccaacagaagagcagattgttaaggtattggagttc
attggaaagaaggaagggctgcaacttccttctggatttcctgctcgtatagctgaaaaa
tcaaataggagcttaaggagagctatattgtcattcgaaacttgtcgtgttcaacagtat
ccctttacaagtaatcaagcaatacccccaatggactgggaggaatatgtttctgaaatt
gcatctgatataatgaaggagcagagcccaaaaaggctttaccaggtgcggcagaagttg
tatgagctacttcttaattgtattcctccagagatcatcttgaagaggctgctttttgaa
ttattgaagaaattggatgctgagttgaagcatgaggtctgccattgggctgcatactac
gaacacaggatgcgtcttgggcagaaagccatatttcacctcgaagcattcgtggccaag
ttcatgagcatctataaggctttcctcattgcagcttttggctga

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