Prunus dulcis (almond): 117617624
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Entry
117617624 CDS
T07328
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117617624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdul03021
]
117617624
03041 Spliceosome [BR:
pdul03041
]
117617624
03036 Chromosome and associated proteins [BR:
pdul03036
]
117617624
Transcription machinery [BR:
pdul03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117617624
Spliceosome [BR:
pdul03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117617624
Complex B
117617624
Complex C
U2 SnRNP specific factors
117617624
Chromosome and associated proteins [BR:
pdul03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
117617624
TFTC complex
117617624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
117617624
NCBI-ProteinID:
XP_034202968
LinkDB
All DBs
Position
2:complement(21113586..21118724)
Genome browser
AA seq
1212 aa
AA seq
DB search
MYLYSLTLQRATGIVCAINGNFSGGKAQEIVVARGKVLDLIRPDENGKIQTLLSVEIFGV
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMVGACEKQKLVYVLNRDTSARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDSTGQAANEAQKHLTFYELDLGLNHVSRKWSDQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQDKPDLRAVIPRRVDLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDIFKVTLDHDNDKVSELKIKYFDTIPVTTSMCVLKSGFLFAASEFGNHSLYQFRAI
GEDPDVESSSATLMETEEGFQPLFFQPRRLKNLVRIDQVESLMPIMDMKVNNLFEEETPQ
IFTLCGRGPRSSLRILRPGLAISEMAVSELPGVPSAVWTVKKNVSDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSIPESLLFLEVQASIGGEDGADHPASLFL
NAGLRTGILFRTVVDMVTGQLSDSRSRFLGLRAPKLFSVSVRGKHAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGNALRVFTIERLGETFNETVVPLRYTP
RKFVVQLKRKLLVIIESDQGAFTAEEREAAKKECFEAAGIGENGNGNVDQMENGGDNEDD
PLSDEHYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAFSICTVNFHDKEYGTLL
AVGTAKGLQFWPKRSVTAGYIHIYRFLEDGKSLELLHKTQVDGVPLALCQFQGRLLAGIG
PVLRLYDLGKKRLLRKCENKLFPNSIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIF
ADDCVPRWLTASYHIDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGRIKWEQGKLNG
APNKVEEIVQFHVGDVVSCVQKASLIPGGGECIIYGTVMGSLGALLAFTSRDDVDFFSHL
EMYMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPGEI
LKKLEEIRNKII
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgtatctttacagcctcactcttcagcgagcgacgggcatagtctgtgccatcaatggc
aatttctccggcggaaaggcccaagagattgtcgtcgccagaggcaaagttctcgacctt
attcgacccgacgaaaatggtaagatccagactctactctctgttgaaatttttggcgtc
attaggtctttagctcagtttaggctcactggttctcagaaagactatattgttgttggg
tccgattcgggtcgaatagtaattcttgagtataacaaggaaaagaatgtctttgataaa
gtccatcaagaaactttcggtaagtcgggttgtcgccggatagttccgggccagtatttg
gccattgaccccaaggggagggctgttatggtcggggcctgtgaaaagcagaagcttgtt
tacgttttgaatagggatacatctgcaaggttaactatatcatcccccttggaggcccac
aagtcgcatacgatagtgtattcgatttgtggggttgattgtgggtttgataaccccata
tttgctgccattgagttggattattcggaagctgatcaggactctactgggcaggcggca
aacgaggcacagaagcatttgactttctacgagctcgaccttgggcttaaccatgtctct
aggaagtggtcggatcaggttgataatggtgcaaatttactggtcacagttcctggaggt
ggggatgggccaagtggtgtattggtctgtgcggaaaattttgtgatttacaagaatcag
gataaaccggatcttagggccgtgattcccaggcgtgtagatttgccagctgagcgtggg
gttcttatagtttcagcagctatgcacaagcagaagtcaatgttctttttccttttgcag
acagagtatggggatatatttaaggttactctggaccatgataatgacaaggtctcagaa
ttgaagatcaaatattttgatacaattccagttactacttcaatgtgtgtgttaaaatct
gggtttttgtttgctgcgtcagagtttgggaatcactctttgtaccagttccgagcaata
ggcgaagatcctgatgtggagtcttcctcagctacattgatggaaactgaagaaggtttc
caacctttgtttttccagcctagaagacttaagaaccttgttaggattgatcaggttgag
agcttaatgccgataatggatatgaaggtcaataatctctttgaggaagaaacacctcaa
atatttacactttgtgggcggggccctcgttcatccctcaggattctaaggcccggttta
gctatcagtgagatggctgtgtcagagcttccaggtgtaccgagtgcagtctggacagtg
aaaaagaatgtatctgatgagtttgacgcatacattgtggtgtcatttgcaaatgctacc
cttgtgctttcaattggtgagacagtggaagaagttagtgacagtgggtttcttgacact
accccatcacttgcagtttctttgataggtgatgattctctcatgcaagttcacccaaat
ggaattaggcatattagggaagatggacgtattaatgaatggagaactcctggaaagaga
acgatcgtcaaggttggctctaatagacttcaagtggttattgctttgagcggcggagaa
cttatatattttgaagttgatatgacgggtcaattgatggaggtggagaagcatgaaatg
tctggtgatgtagcttgtctggacattgcccctgtacctgaagggagacagagatctcgt
ttccttgcagttggttcatatgacaacactattcgtattttgtcattggatcctgatgac
tgtatgcagattctgagtgtgcaaagtgtttcttcaattccagaatctctcctatttctt
gaggttcaggcatcaattggtggggaggatggtgctgatcatcctgccagccttttcctt
aatgctggtttacgtactgggattctgttcaggacagtggtagatatggtgacaggtcag
ctttctgattcccgttcacgattcttaggactaagagctccgaagctattttctgttagt
gtgagaggcaagcatgctatgctttgtttgtcaagtcggccctggctcggttatattcat
caaggacattttctgttaacacccctatcttatgagacacttgaatatgccgcatcattt
tcatctgatcaatgtgcggaaggtgtagttgctgttgctggaaatgctttgagggttttt
actattgaaaggttgggagaaacctttaacgaaactgtggttccactgaggtacactccc
agaaagtttgttgttcaactcaaacgaaagctattagtaattattgaaagtgatcaagga
gcattcacagcagaagagcgtgaagctgcaaaaaaggagtgctttgaggctgcaggaatt
ggtgaaaatggaaatggtaatgtggatcagatggaaaatggtggtgataatgaggatgat
cccctctccgatgagcactatggctatcctaaggcagagtctgagaaatgggtttcttgc
attagagttcttgaccccaagacagcaactacaacttgtctgctggagcttcaggataat
gaagctgcattcagtatatgcacagtgaatttccacgataaggagtatggtacgctttta
gctgttggtacagcaaagggactgcagttttggcccaaaagaagtgtaacggcagggtat
attcatatctatagatttctagaggatggaaagtcccttgaacttttgcacaagacacaa
gtggatggtgttcctcttgctttatgccagtttcagggaagattactagcaggcatagga
ccagtgctcagactgtatgatttggggaaaaaaagattgcttagaaaatgtgagaataag
ctgtttcccaactccattatatctattcaaacctatcgtgataggatttacgtaggtgac
attcaagagtcatttcactactgcaagtacagacgggatgagaatcagttgtatatcttt
gctgatgattgtgttccaagatggcttacagcgtcatatcatatagattttgacaccatg
gcaggtgcagacaagtttggaaatgtctattttgtgcggttaccacaggatgtttcagat
gagatagaagaggatccaacaggtgggaggataaaatgggagcaggggaagttgaacggc
gctcccaacaaagtagaggagatagtgcagtttcatgttggtgatgtggtcagctgtgtg
cagaaggcatctctaattccaggtggtggggaatgcatcatctatgggacagtgatgggt
agcttgggtgcattgcttgcattcacctctcgtgatgatgttgacttcttttctcacctg
gagatgtatatgaggcaggagcatccgcccttgtgtggtagagatcacatggcttataga
tcagcctattttccagttaaggatgtgattgatggagatctgtgcgagcagttcccaaca
ttgcctatggatctgcagagaaaaattgcggatgagttggatagaactcctggagagata
ctgaagaaacttgaggaaattcgaaataagatcatttaa
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