Prunus dulcis (almond): 117617769
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Entry
117617769 CDS
T07328
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117617769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdul03041
]
117617769
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117617769
Spliceosome [BR:
pdul03041
]
Complex C
Other components
Step II factors
117617769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
ABC_tran
AAA_30
nSTAND3
TsaE
AAA_16
GIPC1_GH2
Sigma54_activ_2
PhoH
Motif
Other DBs
NCBI-GeneID:
117617769
NCBI-ProteinID:
XP_034203187
LinkDB
All DBs
Position
2:complement(9029672..9035141)
Genome browser
AA seq
1195 aa
AA seq
DB search
MAATDDGLKKLEYLSLVSKVCSELETHIGVGDKVLAEFITELGRKCETVDEFDTKLKKNG
AEMPDYFVRTLLTIIHAILPPKPKPEKDSKKESASDGRKTKFKALAVADNKDRVKDIEKE
IEMETKEKRNRREEQDEEREEDRRRGSDRYREGDRDRDRDRHKGGRDRDGRERRRERYDR
DERRRDTHYNDDDDDRGRHTDRYNKHKRDRYEDDGDVKEDGDDRRGNRDRQNGQNHSDEP
ELYQVYKGRVSRVMDTGCFVQLNDLRGKEGLVHVSQMATRRISNAKDVVKRDQEVYVKVI
SISGQKLSLSMRDVDQHTGKDLLPLKKSSEDDALRTNPSFSKDGPVTRTGLSGIRIVEED
DVGPSRRPLKRMSSPEKWEAKQLIASGVLGVTEYPMYDEETDGMLYQEEGAEEELEIELN
EDEPAFLNGQSRYSVDMSPVKIFKNPEGSLGRAAALQSALIKERREVREQQQRTMLDSIP
KDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKTISFGQRSKLSIQEQRQ
SLPIYKLKKELIAAVHENQVLVVIGETGSGKTTQVTQYLAEAGYTTMGKIGCTQPRRVAA
MSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVVM
LDEAHERTIHTDVLFGLLKKLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFP
VEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKN
VPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQN
VYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRI
NLGTTTLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEF
PLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHL
TLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKI
RKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMR
EVTVVDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggctgccactgacgatggtttgaagaagctcgagtacctttccttggtttccaaggtc
tgttcagagctcgaaacccatataggggttggggacaaagttctggcggagttcatcact
gagttgggacgaaagtgcgagacggtggacgagtttgacaccaaattaaagaaaaacggt
gccgagatgcccgattactttgtccgtacactccttactatcattcacgctattcttcca
ccaaagccaaagccggagaaggactcgaagaaagagagcgcttctgatggtaggaagacc
aagtttaaggctttggcagtcgcggataataaagatagagtcaaggacatcgagaaggaa
attgagatggagaccaaggaaaagcgaaacagaagagaagaacaagatgaagagcgagaa
gaagataggcgtagaggtagtgatagatatagggaaggagatagagatagagatcgagac
agacacaaaggaggtagagatagagatgggagggagaggcgaagggaaaggtatgataga
gatgagaggcgcagagatacacattataatgatgatgatgatgacaggggaaggcataca
gatcgatacaataagcataagagagataggtatgaagacgatggagatgttaaggaagat
ggtgatgataggagaggtaatagggatcggcagaacggccagaaccattcggatgagccc
gaattgtatcaggtttataagggcagggtttcgagagtgatggacactggttgttttgtt
cagttgaatgatttaagagggaaggagggtctggttcacgtttcacagatggcaactagg
cgaattagcaatgctaaggatgtggtgaagagggatcaggaagtttatgtgaaggtgatt
tcaatttcaggtcagaagttgagcctttcgatgagggatgttgatcaacatacaggtaag
gatttgctccccttgaagaagagctcagaggatgatgctcttaggacgaacccatctttt
tcaaaggatggacctgtgactaggactggtctttctgggattaggattgtggaagaggat
gatgttggcccatcacgccggccattgaagagaatgagctcgccagagaagtgggaagcc
aaacagttgattgcctcaggtgttttgggtgttacagagtatcctatgtatgatgaggaa
accgatgggatgctttatcaagaagagggagctgaggaagagcttgagattgagctcaat
gaggacgagccagcctttttaaatggacagagcaggtattctgttgatatgtcacctgtg
aaaatctttaagaatccagaagggtcactgggtcgtgcagctgcacttcagtccgcactc
attaaggagcgtagagaagtgcgtgagcagcagcaaagaaccatgttggattctatccca
aaggatctcaatcgtccctgggaagatccaatgccagagactggtgagaggcatcttgca
caagaacttagaggtgttggtttgtcagcatatgatatgcctgagtggaagaaggatgct
tttgggaaaactatcagttttgggcagaggtcaaaactctcaatccaggaacagaggcag
agcttgcctatctacaagctgaagaaagaattgattgcagcggtgcatgagaaccaagtg
cttgtcgtcattggtgagactggttcgggtaagacaacacaggtaacgcagtatcttgca
gaagcgggttacacgacaatgggtaagattggttgtacacagccacgtagggtggctgct
atgtctgtggccaagagggttgctgaagagtttggttgtcgtttaggagaggaagtcggc
tatgcaattcgttttgaggattgcactggtccagacactgtcatcaagtacatgactgat
ggtatgcttcttagggagattttgattgatgagaacctttctcagtattctgtggtcatg
cttgatgaagctcatgagaggacaatccacacagatgttctttttggactactgaagaag
cttgtgaagcggagaccggaccttcgtttgattgtcacatctgctaccttggatgcggag
aagttttccggttatttctttaactgtaacatcttcactatccctgggagaacttttcct
gtagagatactctacactaaacagccggaaagtgactaccttgatgcatctctaataact
gttctacaaatacacttgacagaacctgaaggtgacattcttcttttcttgactggacaa
gaagagattgattttgcatgccagtctctctatgagaggatgaaaggtcttggtaaaaat
gtccctgagttgattatcctaccagtgtatagtgcccttcctagtgaaatgcagtcaagg
atatttgatcctgccccaccaggtaagaggaaagtagttgtggctactaatattgctgag
gcatcactgaccattgatgggatattttatgtcattgatcctggttttgcaaagcaaaat
gtttataacccaaagcaggggctagattcactggtcataactccaatttcccaagcatca
gctaagcaacgagctgggcgtgctgggcgtacaggccctgggaaatgttaccgcctctac
actgagagtgcataccgcaatgagatgtcccctacttcaattccagaaatccagaggata
aatcttgggactactacacttacgatgaaagctatggggataaatgatctcttgtctttt
gattttatggatcctccttcaccccaagcactcatttctgccatggaacaattgtacagt
ttaggagcactggatgaggaggggctgctcaccaaattgggtaggaaaatggctgagttt
cctctggatccacccttgtctaagatgctattggccagtgtggaccttggatgcagtgat
gagatcttgaccatcattgcaatgattcagactggcaatattttttacagacctagggaa
aaacaagcccaggcagatcagaagagagccaagtttttccagccagagggagatcatctg
actttacttgcagtctatgaggcatggaaagctaagaatttttcagggccatggtgtttt
gagaattttgttcagtctcgatccttgaggagggcacaggatgtcagaaaacagcttctc
agcatcatggacaagtataaactagatgttgtcagtgctggaaagaattttacaaagatc
aggaaggcaattacggcagggtttttcttccacggtgctagaaaggacccgcaggagggt
tatagaaccctagtggagaaccaaccagtttatatacacccaagcagcgccctcttccag
agacaaccagattgggtgatctaccatgagctggttatgaccacaaaggagtacatgcgc
gaggtgacggtcgtcgaccccaaatggcttgtggaactggcacccaggttcttcaaagtg
gcagatcccaccaagatgagcaagcgcaagcgtcaagaacgtattgaaccgctatatgat
agataccatgaacctaactcttggcgtcttagtaagcgacgtgcttga
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