Prunus dulcis (almond): 117618165
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Entry
117618165 CDS
T07328
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117618165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdul03041
]
117618165
03009 Ribosome biogenesis [BR:
pdul03009
]
117618165
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117618165
Spliceosome [BR:
pdul03041
]
Complex A
U2 snRNP components
U2 related factors
117618165
Complex B
117618165
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
117618165
Ribosome biogenesis [BR:
pdul03009
]
Eukaryotic type
90S particles
Helicases
117618165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
SRP54
ABC_tran
nSTAND3
T2SSE
ResIII
AAA_30
AAA_7
Microtub_bd
PhoH
Flavi_DEAD
TsaE
AAA_16
UvrD-helicase
ATPase
Myosin_head
Motif
Other DBs
NCBI-GeneID:
117618165
NCBI-ProteinID:
XP_034203665
LinkDB
All DBs
Position
2:13269933..13272056
Genome browser
AA seq
707 aa
AA seq
DB search
MERKRKVCLFNTVVSSSAKMRKSGSGGGATTIDSAVVSSVINPWTGMPYSQSYYEILEKR
KTLPVWQQKDEFLKALKANQCIILVGETGSGKTTQIPQFVLESINAEIPDGKRMMIACTQ
PRRVAAMSVSRRVAEEMDVKIGEEVGYTIRFEDCSSASKTLLKYLTDGMLLREAMADPLL
ERYKVIILDEAHERTLATDVLFGLLKKVLRNRPDLKLVVMSATLEVEKFQGYFSGAHCMK
VPGRLHPVEILYSEEPEKNYVEATIRTIVQIHMFEGPGDVLVFLTGEEEIEDVCYKIDKE
IAKFGDQSGPVKVLPLYSTLPPAVQQKIFEPVRSGRKIVVSTNIAETSLTIDGIVYVIDP
GFSKQKVYSPRGCVESLLVSPISKASACQRAGRAGRTRPGKCFRLYTEKSFHNHLEAQIC
PEILRSNLANTVLTLKKLGIDDLVHFDLMDPPAPETLMRALEVLYSLGALDDEGNLTKLG
EIMSEFPLDPQMSKMLIMSPGFHCSNEILSICSMLSVPNCFLRPREARKTADEAKAKFGH
MDGDHITLLNVYHAYKNNEDPVWCYQNFVNEKALKAADNVRQQLARIMAQFNLKLCSTDF
KSGDYYINIRKALLAGYFMQVAHLESNTGHYSTVKDNQVVHLHPSSCLDHKPEWIVYHEY
VLTSRNFIRTVTNICGDWLAEIMIALEKSGKKLGYGGLNLKDRKQTT
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggagaggaagaggaaggtgtgcttgtttaacacggtggtctcatcatcagcgaagatg
agaaaatcaggcagcggtgggggagccacaacgattgacagtgcggtggtaagcagtgtg
atcaatccgtggactggaatgccttattcccagagctattatgagatccttgagaagagg
aagactttgccagtttggcaacagaaagatgagttcttgaaggctcttaaggccaaccaa
tgtataattttggttggtgagactggtagcggtaaaaccactcaaatccctcaatttgtt
ttggaaagtattaatgcagaaattccggatggtaaaaggatgatgattgcgtgcacgcag
ccacgtagagttgccgcaatgtcagtgtctcgtcgtgtagctgaagagatggatgtgaag
ataggagaagaggttggctacactattcgtttcgaagactgcagcagtgcctctaaaaca
ttgttgaagtatttaacagatggtatgcttttaagagaggcaatggcagatcccttgttg
gaaaggtacaaggtgataatactggatgaggcacacgaaagaacgttagcaacagatgtt
cttttcgggcttctcaagaaggtgttgagaaataggcctgatttgaagttggttgtgatg
agcgctactcttgaggtcgaaaaatttcagggctatttcagtggtgcgcattgtatgaaa
gttcctggcaggcttcatccagtggaaattctttacagtgaggaacccgaaaagaactat
gtggaggcaacaattcgaaccattgtgcagattcatatgtttgagggtccaggggatgta
cttgtctttttaactggggaggaagagattgaagatgtatgctacaaaattgacaaagaa
attgcaaaatttggtgatcagtctggtcctgtcaaagtgttgcctctgtactcaactctg
cctccagctgtgcagcagaaaatatttgagccagtacgttctgggaggaagattgtggtg
tcaacaaacattgctgaaacttctttaaccatagatggaatcgtttatgttatcgacccg
ggattttctaaacagaaagtttatagcccaagagggtgtgttgagtcattgttggtgtct
ccaatttccaaggccagtgcttgtcagagggcagggcgtgctggaaggactagaccgggg
aaatgtttcagactttacactgagaaaagtttccataatcatcttgaagcacaaatatgt
ccagagatattgagatcaaaccttgcaaatacagtgcttactttgaagaaactaggaatt
gatgacttggttcattttgatctcatggaccctcctgctcctgagacattgatgcgagca
ctagaggttttgtattctttgggagcattggatgacgagggtaatttgaccaagctgggg
gagattatgagcgagttcccattagaccctcagatgtcaaagatgctcatcatgagccct
ggatttcactgctctaacgaaatcctgtcaatctgttcaatgctctcggtacctaattgt
tttcttaggcctagagaggctcgaaaaactgcagacgaagcgaaagcgaagtttggtcac
atggatggagatcacataacgcttctcaatgtgtaccacgcctacaagaacaatgaggat
cctgtgtggtgctatcaaaactttgtcaatgagaaggcactgaaggctgcagacaatgtt
cggcagcagctagcgcgaattatggctcagttcaatctcaagttatgcagcactgatttt
aagagtggggactactacatcaacataagaaaggccttgcttgctggatatttcatgcag
gtggctcacctggaaagcaacacaggacactacagcacagtgaaagataaccaagttgta
cacttgcatccctccagttgcttggatcacaagccagagtggattgtttaccacgagtat
gtcctgaccagtaggaattttatccggactgtgacgaatatttgcggcgactggctagct
gagattatgattgcactagaaaaatcaggcaaaaaattgggttatggagggcttaactta
aaagacaggaagcagactacttga
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