Prunus dulcis (almond): 117619160
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Entry
117619160 CDS
T07328
Name
(RefSeq) flowering time control protein FY isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117619160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117619160
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117619160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
Beta-prop_DCAF4
eIF2A
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_HPS5
WD40_like
WD_LRWD1
PROPPIN
WDR54
Motif
Other DBs
NCBI-GeneID:
117619160
NCBI-ProteinID:
XP_034204925
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Position
2:3213411..3225543
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AA seq
753 aa
AA seq
DB search
MFIHFSACYGLGLGSVLRFGATMMYPDPQQQHHQQQHQHQQHQQHQQQGGEFHRGPPPQA
PMMRQPSASSTNMAPEYHHPSGPAPPLPPYDAHPDGFAAKRMRKLTQRRAVDYTSTVVRY
MQIRMWQRDARDRTVLQPTPAAAIDMLPTVAYSDNPSTSFAAKFVHTSLNKNRCSINRVL
WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIK
YWQNNMNNVKANKSAHKESVRDLSFCKTDLKFCSCSDDTTVKVWDFARCQEERTLTGHGW
DVKSVDWHPTKSLLVSGGKDNLVKLWDAKSGRELCSFHGHKNMVLSVKWNQNGNWVLTAS
KDQIIKVYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSFDGSIYHWLVGHDTPQV
EIPNAHDNSVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTGRDKFNIGQNQGFGEQNP
AFGGRMTGNFPVPEGPPTPGPFPPGLTRNEGTIPGVGVAMPLSLDASTQGEQQQPHALSM
PLGAPPLPPGPHPSLLAANQQQQYQQNPQQIPQQQHQQHQAHPQQMPPMPLPPPNMPHLQ
PPSHLPLLPHPHLHRPPPQMPPLGMPSSVPGSLPMPSSVPTSHSMQMGMQGTMNQMVHPL
PQGHYMGMNPMHSGSLPTSGASAPVGGFANGMPNMQGPSNASGGQMYPQGGTFNRGQPGQ
IPMHPGYNPYQTRGQSGMPQPPPGPPPHGQTPQ
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgtttatccatttctcagcttgctatggattagggttagggtcagttcttcgatttggg
gcgacaatgatgtaccctgatcctcaacagcaacaccaccaacagcagcatcagcatcag
cagcatcagcagcatcagcagcaaggtggggaatttcacaggggccccccgccgcaggca
ccaatgatgcgtcagccgtcggcctcttcaactaatatggccccagagtatcaccaccca
tctggccccgctcctcctcttcctccttacgatgctcatcctgacggttttgctgcaaaa
aggatgagaaagcttacccagaggagagcagttgattacactagcactgtggtgcgatat
atgcagattcgaatgtggcagcgtgatgcaagggataggacagtattgcaacctacacca
gcagcagcaattgatatgttgccgacagttgcgtattcagataatccctccactagtttt
gctgcaaagtttgtacatacgtccttaaacaaaaatcgttgttcgattaatcgggtcttg
tggactcctacagggagacgtcttattactggctctcaaagtggggaattcactctttgg
aatggacaatcatttaactttgaaatgattcttcaggcgcatgatcaagcaatcaggtct
atggtatggagtcataatgacaattggatggtctctggtgatgatgggggctcaataaag
tattggcagaacaacatgaataatgtgaaggccaataaatctgctcataaagaatctgtt
cgtgatttaagcttctgtaagactgacttgaagttctgttcctgttctgatgataccact
gttaaagtttgggattttgcacgttgtcaagaagagcgcacattgactggccatggttgg
gatgtgaagagtgttgactggcaccctaccaaatctctactagtttcaggtgggaaagac
aatcttgtcaaactttgggatgctaagtcagggcgagaactctgttcatttcatggccac
aaaaatatggtgctttctgttaaatggaaccaaaatggtaactgggtgctaacggcttcc
aaggatcaaatcattaaggtttatgacataagggctatgaaggaacttgaatcttttcgt
ggccatcgaaaggacgtgactgctctggcttggcatccgtttcatgaagaatattttgtc
agtgggagttttgatggatccatttaccattggcttgttgggcatgatactccccaggtt
gaaattcctaatgcacatgataacagtgtgtgggatcttgcatggcatcctattggttat
cttctctgcagtggtagcaacgatcacactacaaagttttggtgcagaaataggccggga
gacaccggtcgtgataaatttaacattggtcagaatcaaggttttggtgagcagaaccct
gcttttggtggtcgcatgactggtaactttccagtacctgaaggaccaccaactccagga
ccatttcctcctgggttgactcgaaatgaaggaacaattccaggtgttggagttgctatg
ccattatctcttgatgcatcaactcagggagagcaacagcaacctcatgcactttcaatg
cccttaggggctcctcctctccctcctggtccacacccctctcttcttgctgctaatcag
cagcaacaatatcagcaaaatcctcaacagatcccacaacagcaacatcaacaacaccaa
gctcacccacagcaaatgccccctatgcctttgccacctccaaatatgccacatctacag
cctccatcccatttaccgttgctgccccatcctcatttacatcgcccgccaccccaaatg
cccccactcgggatgccatcatcagtgcctggatccttgcctatgccttcatcagttcct
acctcacattcaatgcaaatgggaatgcaaggtacaatgaaccagatggttcatccattg
ccgcaaggtcattacatgggcatgaatccaatgcactcaggatccctacctacaagtgga
gcatctgcacctgttggaggttttgcaaatggtatgccaaacatgcagggcccatcaaat
gcaagtggaggccaaatgtatcctcagggtggcacctttaatcggggtcaacctgggcaa
attccaatgcatccagggtataatccctaccagactaggggtcagtctggtatgcctcaa
cctccaccaggtccgccaccgcacgggcaaacacctcagtag
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