Prunus dulcis (almond): 117620692
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Entry
117620692 CDS
T07328
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03013
Nucleocytoplasmic transport
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117620692
09122 Translation
03013 Nucleocytoplasmic transport
117620692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117620692
03041 Spliceosome [BR:
pdul03041
]
117620692
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117620692
Spliceosome [BR:
pdul03041
]
Complex C
Other components
EJC/TREX
117620692
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117620692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
117620692
NCBI-ProteinID:
XP_034206735
LinkDB
All DBs
Position
3:complement(13883890..13904812)
Genome browser
AA seq
1874 aa
AA seq
DB search
MSMSLPPVERAYVREDCVREWKNGTSNFKLADPVPMLRFLYELCTTMVSGELPLQKCKAA
LDSVEFSDKVSDEELASSFADIVTQLSQDIRMPGEHRARLIKLAKWLVESSLVPLRLFQE
RCEEEFLWEAEMIKIKAQELKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQNSE
TSSHNAAATIGIIKSLIGHFDLDPNHVFDIVLECFELQPDSNVFLELIPIFPKSHASQIL
GFKFQYYQRLEVNSPVPFGLYKLTALLVKEEFIDLDSIYAHLLPKDDEAFEHYSAFSSKR
LDEANKIGKINLAATGKDLMDDEKQGDVTIDLFAALDMETEAVGERSTECENNQTLGLLT
GFLSVNDWYHAHLLFERLSPLHPVEHIQICNSLFRLIEKTISSAYDTVRRAHLLSFGSSS
GTSVDVIHTENSSGHGSFVDLPKELFQMLACAGPYLYRDTLLLQKVCRVLRGYYSSALDL
VSSGERVVDPSYVFVGNPRLHLKEAKSRIEEALGTCLLPSLQLVPANPAVGQEIWEVMSL
LPYEVRYRLYGEWEKEDERIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHAN
PMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDVLEYVVIERLAQGGRDKLKEDGLNV
SDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVHYTEN
LTEDQLDAMAGSETLRYQATSFGVTRNNKALIKSTNRLRDSLLPKDESKLAIPLLLLLAQ
HRSVVIIDADAPYIKMVSEQFDRCHGTLLQYVEFLCSAVTPTSAYAQLIPSLDDLVHQYH
LDPEVAFLIYRPVMRLFKCRGSSDVFWPLDNNDTQGITSANSESEAAEHSGNLVLDVGSP
SKPVTWLDLLNTVKTMLPPKAWNSLSPDLYATFWGLTLYDLYVPRNCYESEIAKQHAALK
ALEELSDNSSSAITKRKKDKERIQESLDRLTSELRKHEENVASVRKRLSREKDKWLSSCP
DTLKINVEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDILICRTLQPM
ICCCTEYEVGRFGKFLQETLKIAYYWKKDESIYERECGNMPGFAVYYRHPNSQRVAYFQF
MKVHWKWSQRITKLLIQCLESTEYMEIRNALILLSKISSVFPVTRKTGVNLEKRVSKIKA
DEREDLKVLATGVAAALAARKSSWITDEEFGNGYLELKSAPLASKSSAGNSAATHSGSTI
NISQSEPIGGKVGALPSQHPESSNSVKDQILKTKTSDGRLERVESISTVKSDQGHLKLKV
GSLVSGSDAQSPMPSPALQSGTSRSMENKKQVNESSNRTSDENMGKAAPKNSSESELRAQ
AKRSGPAGSLAKPPKQDLAKDDGRSGKGIGRDVLCHASAVPTNVSPAIAANGNTVSASAK
GSFAKTSVEIHGIDSKVDVGAAKASNTRVSAPKEDGPETSDALRPHSSRLVHSPRHDNSA
SASKSSDKLQKRTSPAEETDRQSKRRKGETEMRDFEGEARLSDRERSVDARLLDLDKSGT
DDQSVYKATDKPSDRSKDKGSERHDKDYRERLDRPDKSRGDDLGERSRDRSMERHGREHS
VEKVQERGMDRSVDRLSDKSKDDRGKVRYNDISTEKSHVDERYHGQSLPPPPPLPPHMVP
HSVSSGRRDEDADRRFGTTRHTQRLSPRHDEKERRRSEDNSLITQDDSKRRREDDFRDRK
REDREGLSIKVEEREREREREKANLLKEETDAIAASKRRKLKREHPPSGEPGEYSPVPPP
PPPLSISLSQSYDGRDRGDRKGPPVQRAGYLEEPSVRIHGKEAASKMTRRDPDPMYEWED
EKRQRAEQKRRHRK
NT seq
5625 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgtctctcccacccgtagagcgtgcatacgttagagaggactgcgttcgtgaa
tggaagaatggcacctctaatttcaagctcgcagaccccgttcccatgcttcgattcctc
tacgagctctgcaccaccatggtttctggggaattgccattgcagaagtgtaaagcagcg
ttggattcagttgagttctctgataaggtttcggacgaagagttggcttccagttttgcg
gatattgtcacccaattgtctcaagatattagaatgcctggagagcatcgtgctcgtctt
ataaaattggctaaatggttggtggaatcttccttagttccgttgagacttttccaggaa
cgctgtgaggaagaatttttgtgggaggctgaaatgatcaagataaaggctcaggaattg
aagagtaaagaggtcagagtaaacacccgtcttctatatcagcaaacaaagtttaacctt
cttcgagaagagagcgagggctatgccaagctagttacccttctttgccaaaactcagaa
acttcatcacacaatgcagcagcaacaataggcattataaagtcattaattggacatttt
gatctggatccaaatcatgtctttgatattgttttggagtgctttgaacttcagccagat
agtaatgtatttttggagctgataccaatttttccgaagtctcatgcttcacaaatcctt
ggttttaaatttcaatattatcagcgtttggaagtaaatagtccggtgccatttggactt
tataagcttacagctttgttggtgaaggaggaatttattgatcttgatagcatatatgct
catctacttcccaaggatgatgaagcatttgaacattatagtgctttctcttccaagcga
cttgatgaggctaacaaaattggtaaaataaatcttgctgctactgggaaggatctcatg
gatgatgagaaacaaggagacgtgacaatagacctctttgccgctttagacatggaaaca
gaggcagttggtgagcggtctacagagtgtgaaaataatcaaactttgggcttgctcact
ggttttctttctgtaaatgactggtaccatgcacatttgctatttgagcgtctctcacct
ctacatcctgttgaacatattcaaatctgtaatagcttgttcaggctcattgaaaaaaca
atctcttctgcatatgacactgttcgccgagcacatctcctaagttttgggtcttcctca
ggaaccagtgttgatgtaattcatacagaaaattcgtcaggacatggatcatttgttgac
cttcccaaagaactttttcagatgcttgcttgtgctggaccctatctttatcgcgatact
ttgttgctgcagaaggtatgtagagtattgaggggttattactcgtctgcacttgatctt
gtaagcagtggtgaacgagtcgtggatcccagttatgtttttgtcgggaatcctcgtctg
caccttaaggaagcaaagtcaaggatagaggaagccttgggaacatgtctacttccttct
ttacaattggtacctgcaaatccagccgttggacaggagatctgggaagtgatgagtcta
ctcccctatgaggtgcggtatcgtttatatggtgagtgggagaaagaagatgaacgcatt
cctatggttttagcagcaaggcaaacagccaagttggacactagaagaattttgaaacgc
cttgcaaaagaaaatttgaagcagctaggtcggatggttgcaaagttagctcatgcaaat
ccaatgactgtacttagaacaattgttcatcagattgaggcgtacagagatatgattact
cctgttgtagatgcatttaagtatttgactcagctggagtatgacgttttggaatatgtt
gtgattgagcgtcttgcacaaggagggcgtgataagctaaaagaggatggccttaacgtg
tcagactggcttcaatctttggcttcattttggggtcacttgtgtaagaaatacccatct
atggaattgaggggccttttccagtatcttgtaaatcaactgaaaaagggccaaggaata
gagctggttctccttcaggagcttattcagcaaatggcaaatgtccattacaccgagaat
ctgactgaggatcagctggatgccatggcaggcagtgagactcttcgttatcaggcaact
tcttttggtgttactcgcaataacaaggcattaatcaagtccactaacaggctaagggac
tcgctgctccccaaggatgaatcgaagctggcaataccccttttgttacttcttgctcag
catcgttctgtggtcataatagatgctgatgcaccttacattaagatggttagcgagcag
tttgataggtgtcatggaactctccttcaatacgtggaatttctttgcagtgctgtgaca
ccgacatcagcatatgctcagctaattccttcgcttgatgatcttgtccatcaataccac
cttgaccctgaggttgctttcttaatttatcgccctgtaatgaggctcttcaagtgccgt
gggagttccgatgtcttctggcctctagacaataatgacactcagggtatcacctctgca
aattcagagtctgaagctgcagagcattctggaaatttggttctggatgttggctctcca
tcgaagcccgtaacgtggttggatcttcttaatactgttaaaacgatgttgcctccaaaa
gcctggaatagcctctcccctgatctctatgcgacattttggggtctcacgctctatgat
ctttatgtccctagaaattgttacgagtctgaaattgcgaaacagcatgctgctcttaaa
gctctggaagagctttctgataattcaagttcagcaataaccaaaaggaagaaagacaag
gaaagaattcaagaatccctagatcgcctgactagcgaactccgaaagcacgaggaaaat
gttgcatctgttcgtaaacgtttatctcgggagaaggacaaatggttgagttcttgccct
gatactttgaagatcaacgtggagttccttcagcgttgtatatttccacgctgtactttc
agtatgccagatgctgtctattgtgccatgtttgtgcacactcttcattccctggggaca
ccattttttaacacagtcaaccacattgatattctcatttgtagaaccttacagcctatg
atatgctgctgtactgagtatgaagtaggtagatttgggaagtttctgcaggagacgttg
aagattgcgtactattggaagaaggatgaatctatttatgaacgcgaatgtggaaacatg
cctggctttgctgtatattatagacatccaaatagccagcgagttgcctatttccagttc
atgaaggttcactggaagtggagtcaaaggattacaaagttattgattcagtgtctggaa
tcaactgagtacatggaaattcgtaacgcactcatactgttgtcaaaaatttcaagtgtt
tttccagttacccgaaagacgggtgtaaatcttgaaaaacgggtttccaagataaaggct
gatgagagagaagaccttaaggtgttggcaactggtgttgctgctgctttggctgctaga
aagtcttcatggattacagatgaagaatttggtaatggatatcttgaattaaagtctgca
ccacttgcttcaaagtcttcggctggtaattcagcagccacacacagtggttctaccatt
aatatttctcaatctgaacctataggaggaaaagtgggagcccttccctcccaacaccca
gaatcatcaaactcagtcaaagaccagattttaaaaaccaaaacctcagatgggaggttg
gaaagagtagaaagtatctcaactgtaaaatctgatcaagggcatctaaaacttaaagtt
ggctcattggtgagtggctccgatgctcagtcaccgatgccctcacctgctttacaatct
ggaacatcaagatctatggaaaataaaaaacaagtgaatgaatcctcgaatagaacctca
gatgaaaacatgggaaaagctgccccgaagaactcttctgaatctgagttgagagcccaa
gcaaaacggtcaggtcctgctggatcgcttgctaagccaccgaaacaggatcttgcaaaa
gatgatggtagatctggaaaaggaattggcagagatgtcttgtgtcatgcatcagctgtg
cctacaaatgtttctcctgccatcgcagcaaacggtaatacagtttcagcatcagctaaa
ggttcatttgcgaagacatcagtagaaattcatggtattgattcaaaggtggatgttgga
gctgcaaaggcttccaatacaagggtttctgctccgaaggaagatggtcctgaaacttct
gatgcactgaggccccattcctctcgacttgttcattctcctaggcatgataattctgct
agtgcttcaaagtctagtgataagctgcaaaagagaaccagtcctgctgaagaaactgac
agacaaagtaaacggcggaaaggggaaactgaaatgagggattttgagggcgaagctcga
ttgtctgaccgagagaggtctgttgatgctcgactgttggatcttgacaaatcaggaact
gatgatcaaagtgtttataaggccactgataagccttcagatcggtccaaagataagggc
agtgaaagacatgacaaggattacagggaaaggttggatcgtcctgataagtcacgtgga
gacgatttaggtgagagatccagggacaggtcaatggagagacatggaagggagcattca
gtggagaaagttcaagagaggggtatggataggagtgtggatagactctctgacaaatct
aaggatgacagaggtaaagtaaggtacaatgatatatcaacggaaaaatctcatgttgat
gaacggtatcatgggcaaagcttacctccgccaccacccttacctcctcacatggttccg
cattcagttagttctggaagaagagatgaagatgcagatagaaggtttgggaccacaagg
catactcaaaggctttctccgagacatgatgagaaggagcgtagacgatctgaagataat
tctttaattacacaagatgattcaaaacgtagaagagaagatgattttagagatagaaag
cgcgaagatcgtgaggggctgtcaataaaggtggaggagagggagagggagcgagaaagg
gagaaagcaaacctcttgaaggaggagacagatgcaattgcagcttcgaagaggcggaaa
cttaaaagagagcacccgccttctggggaacctggtgagtattcaccagttccccctccg
ccacctcccctttctattagtttgtcccagtcatatgatggaagagataggggagaccgg
aaaggaccccctgtccagcgtgcagggtacttggaggaaccaagtgtgaggattcatggt
aaagaagcagccagcaagatgactcgtcgtgaccctgatccgatgtacgaatgggaggat
gagaaaaggcaaagagctgaacaaaagagaagacaccggaagtga
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integrated database retrieval system
