Prunus dulcis (almond): 117621055
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Entry
117621055 CDS
T07328
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117621055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdul03041
]
117621055
03009 Ribosome biogenesis [BR:
pdul03009
]
117621055
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117621055
Spliceosome [BR:
pdul03041
]
Complex A
U1 snRNP components
U1 related factors
117621055
Complex B
117621055
Ribosome biogenesis [BR:
pdul03009
]
Eukaryotic type
Pre-60S particles
Helicases
117621055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117621055
NCBI-ProteinID:
XP_034207206
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All DBs
Position
3:23012760..23018005
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AA seq
688 aa
AA seq
DB search
MAATATASSGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYDRPTGSAPPLKPS
SAQSISSSVHVQQSSQGRRPDEGDDRYGRGSNGGSKFDSGPRNQQSARSATVSSHNIPNG
TLSALGGSSLRGNGSSDTGIGLSAEAYSRRHEISVIGDNVPPPFTSFEATGFPSEILREV
QNAGFSSPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRSRNDPQLGPTV
LVLSPTRELATQIQDEAVKFGKSSRISCVCLYGGAPKGPQLRDIDRGADVVVATPGRLND
ILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMYTATWPKEVRKIA
ADLLVNPVQVNIGNVDELVANKSITQYIEVLAPMEKHRRLEQILRSQEPGSKIIIFCSTK
KMCDQLSRNLTRQFGAAAIHGDKSQSERDYVLNQFRSGRTPILVATDVAARGLDIKDIRV
VINYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDSKYASDLIKVLEGANQRVPPEIR
EMATRGGGMNRFRRWGSGSGGRDGGRGGRNDSSYGGRDGGRGGGWGFTPSSGRYDRGHNN
GYDRGRSPDKGSGHRGSNRSRSRSLERFDKALPTGGGSAGWSFHKAMMERERSSPPPPRS
LPYGGGVDEAEEGMIPQEEEGGYHIANA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggctgccactgcaactgcctctagtggtcctcgatatgccccggaggaccccactctt
cccaaaccatggagaggattggttgatggtaaaactgggtatctttacttttggaacccc
gagactaatgttacccaatatgacaggcctacgggctcagctcctccgttaaagccgtct
tcggcacaatctataagttcttcagttcatgttcaacaatcttcacaaggacgtcgtcct
gatgagggagatgataggtatggcagaggcagcaatggtgggtcaaaatttgactctgga
ccaagaaatcagcagagtgcaagaagtgcaacagtttcttctcataatattccgaatggg
acacttagtgcacttggaggatcttctctgagaggaaatggatcatcagacactggaatt
ggtttgtctgctgaggcttatagtcgtcgacatgaaatatctgttattggtgataatgtg
cctccacccttcacttcatttgaagctactggcttcccatccgagattcttagagaggta
caaaatgcaggtttttcttccccaactccaattcaggcacagtcttggccggttgctctt
caaagtagagatatagtagccattgctaaaacaggttcagggaagaccttggggtattta
cttcctggattcatccatctcaagcgcagccgtaatgaccctcagttgggtcccactgtg
ttggtgctatcaccaacaagggagctggcaacacagattcaagatgaggcagtgaagttt
gggaagtcctcaaggatatcttgtgtgtgtttgtatggaggagctccaaagggtccacaa
ttgagagatattgaccgaggagctgatgttgtggttgccactcctggccgcttgaatgat
attcttgaaatgaagagaatcagcctccatcaagtttcgtacttagtgttggatgaggct
gaccgtatgctggacatgggttttgaacctcaaataaggaagattgtgaatgaggtacct
gctcgccgccagaccctaatgtatacagcaacttggccgaaggaggttcgcaagattgca
gcagatctgctggtcaatcctgttcaggttaacattggcaatgttgatgaactggttgcg
aataaatccatcacgcagtatattgaagtactcgccccaatggagaaacacaggcggctg
gagcaaatattgcgatctcaagagccaggatccaaaataataatcttttgttcaaccaag
aagatgtgcgatcaactttctcgcaacctaacccgccagtttggagctgctgcaattcat
ggtgacaaatctcagagtgagagggactacgtgttgaatcaatttcgctctgggaggact
ccaattcttgtagcaactgatgttgcagctcgaggattggacatcaaggacataagggtg
gttatcaactacgacttccccactggagtggaggattatgttcacagaattgggagaact
ggaagagctggtgccactgggctggcttacacattcttcggtgatcaggattcaaagtac
gcatcagatctcatcaaagttttggaaggggcaaatcagcgtgtccccccagaaattcgt
gagatggctacccgtggtggtgggatgaacaggttcagacgttggggttctgggtctggt
ggccgtgatgggggtcgtggtggacgaaatgattcaagttatggtggaagggatggtggg
aggggaggtggatggggatttactccctcatctggcaggtatgaccgtggtcacaacaat
gggtatgatagaggccgaagccctgacaaggggtcaggacatagaggctctaaccgcagc
cgtagtcgtagtcttgagaggttcgacaaggctctgcctacaggtggaggctctgcaggg
tggagttttcacaaagcaatgatggaacgtgaacggtcatcgccgccacctccacggtca
ctcccgtatggtggtggggtggatgaagctgaggaaggtatgatacctcaagaagaggag
ggtgggtatcatattgcaaatgcataa
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