Prunus dulcis (almond): 117621186
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Entry
117621186 CDS
T07328
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03013
Nucleocytoplasmic transport
pdul03015
mRNA surveillance pathway
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117621186
09122 Translation
03013 Nucleocytoplasmic transport
117621186
03015 mRNA surveillance pathway
117621186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117621186
03041 Spliceosome [BR:
pdul03041
]
117621186
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117621186
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117621186
Spliceosome [BR:
pdul03041
]
Complex C
Other components
EJC/TREX
117621186
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117621186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
117621186
NCBI-ProteinID:
XP_034207412
LinkDB
All DBs
Position
3:complement(5984812..5991076)
Genome browser
AA seq
428 aa
AA seq
DB search
MGEIRDNDGYEEELVDYEEEDQNAPNSVSAKPSGDTVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPIAGQVAALI
LCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVSIKVHKDLLKNECPHIVVGTPGRILA
LARDKELGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEPEKNRKLTDLLDALDFNQVVIFVKSVS
RAAELNKLLADCNFPSICIHSGMPQEERLKRYKNFKEGLSRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQSRFEVDIKELPEQI
DTSTYMQV
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaatcagagacaacgatggttacgaagaggagctggtcgattacgaagaggaa
gaccaaaatgcccccaactccgtctccgccaagccctctggtgataccgttaaaaagggc
tatgttggcatccacagttcaggattcagagacttcctgttgaaaccagagcttcttcga
gcgattgtggattctgggttcgaacatccttcagaagttcaacatgagtgcatccctcaa
gctatcttaggaatggatgttatctgtcaagcaaaatctgggatgggaaagaccgccgtc
tttgttctatctacccttcagcaaatagatccaattgctggtcaggttgctgctcttatt
ctttgccacacaagagaactggcttaccagatttgtcatgaatttgagagattcagtacc
tatttgccggacctgaaggttgcagtcttctatggaggtgtcagtatcaaggttcacaaa
gacttactgaaaaatgaatgtcctcacattgttgttggaacacctgggagaatattagct
ttggcaagagataaagagcttggactaaagaatgtcagacattttattcttgatgaatgt
gataagatgcttgagtcacttgatatgaggagagatgtgcaggagatctttaagttgact
cctcatgacaagcaagttatgatgttttcagcaacactaagcaaagaaatccgccctgtt
tgcaagaaatttatgcaagatcccatggaaatttacgtagatgatgaggccaaattgaca
cttcatggtctcgtacagcactacatcaaattgagcgaacctgagaaaaaccgcaagttg
actgaccttcttgatgcattggatttcaaccaagttgttatttttgtaaaaagtgtaagc
agagcagctgagctgaacaaattacttgctgattgtaacttcccatctatctgcattcac
tctggaatgcctcaggaagaaaggttgaaacgttacaagaatttcaaggaggggctttca
aggattcttgtggcaacagatttagttggaaggggaattgatatcgagcgtgttaacatt
gttattaattatgacatgccagattctgccgatacctacttacacagggttggcagagct
ggtaggtttggtaccaagggactggcaattacatttgtctcttcggcatcagactctgat
gttcttaatcaggtccagtcaaggtttgaggtggacataaaggagcttccggagcaaatt
gatacttctacatacatgcaagtatga
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