Prunus dulcis (almond): 117621248
Help
Entry
117621248 CDS
T07328
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
pdul
Prunus dulcis (almond)
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pdul03009
]
117621248
Ribosome biogenesis [BR:
pdul03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
117621248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
RYDR_ITPR
Motif
Other DBs
NCBI-GeneID:
117621248
NCBI-ProteinID:
XP_034207499
LinkDB
All DBs
Position
3:complement(5438676..5456475)
Genome browser
AA seq
2726 aa
AA seq
DB search
MATPSQAQAVKSLNKSPGRRRFVFKSFSQRLEEVEVDVFRSLDKVKPEPQAGSTFFRDCL
VEWRELNTAEDFIAFYEKMTPLVQTLPLVLLHKETIISELLSRLQMKARLSLEPILRLIA
VLCRDLLEDFIPFLPRIADSLVSLLECGADREPEAIEQIFTSWSSIMMYLQKYLVQKLVH
VLNVTVNLRYYPKDYIQEFMAEGMSFLLRNAPFEQLKKGVKKIMFEVVQKSIPVRKYGVS
ALLYFVMRGASSRFHSKAEQVLHLLMDDLILGIGENFSQGSDTVVEVLISALQRLCDDLD
SKELNIMFNCLYQEITDCMINGGVERLSCLLSLLVSTVQVKNGQRVSDYQQMLEIVGLLV
RTFIMPSGITMAEEHSSDVVDKVLQLMLCILSGLHSYNDMSTISSCSLQWAPVFDLKNSS
LLGFIRQLLQKDVCILDIFAVNILRAMNDLLETSQEDVIYLLLTFNEKLQMETQSLTFLD
RTREGVPRIQGFMRGAISNWVGVLKGIVNGDSSSTLIHEADLALLWGVINCFPQIAESEE
DFSLLMDLMDADDQILMIEADNIAGFPKHTWESLIGATLNSYYKLIRGKKSELDETSRFL
HLGNRHKSCPQVLVAVADFLDSVYGPIMEGDTKSRTYHPELQADKAIDALDIFADNLCHS
DRGIRASTLRILCHYETLNCNICTEDEPVAKKLRTEVSLTCHVDNQGFNVLPLLLSIEST
PLSISTSRKVTLLISRIQMGLSTGRIAEAYLPLVLNGMIGIFHNRFSYLWNPTSECLAVL
ISQNTGLVWERLLHYFEQCLSRFQASFDQVEEVNSKLTNKSSDLVEGFNLCITSKSDSTP
SAAVLSSLLQSLQRIPTIIESKSRQIIPLFLKFLGYNCKDFKSIGSFNPSVCKGKEWKGV
LKEWLNLLKLMHNLKSFYQNQFLKEVLQNRLLDENDAEIQTKVLDCLLIWKDDFLLPYSQ
QLKNLVSFHNLREELTTWSLSRESNLIEEEHRPDLVPMVIRLLMPKVRKLKKHASQKLSR
LNHRKAVLSFIAQVEVEKLPLFFVLLIKPLQIVSMGSDGAASWFWTLPNGSLAEFQALDF
LKYFTLSNISALSWKKRSGFLHVIEDILGVFDASHVGPFLDFLMGCVVRILGSCSLSLDV
AKGNGSSVENYPDVDLTLLGKDSAVENNVLISTTLRQLKDLRSLCLKIVSFVLNKYEDHE
FSCEFWDLFFMSCKPLIDGFKQEGPSGQKPSSLFSCFLALSRSQKLVPLLYREQKLVPDI
LSILTVTSASKAIVSCVLKFVENLLNLDHELDDEDSAVKRVILPNLEALIDSLHSLFHSN
NAAKRKLFKHPGDAETRIFKFLPKYIKSAVPARKFVDILLPVLANGTQNSDFCFEVVQVI
RDIVPVLGSEITNKILNAVSPLLTSTDLDKRVFICDLLDAVARVDPSVHFVAKLVQDLNA
TSNTELGSLDYDNVVNAYEKISVDIFYTIREDHALVILSHCVYDMSSEELILRHSAYKSL
RSFVEFAALILGQVVSNHCEMPDMPDKMLASDNCYWTRACIQRITSKFLLNHMGNALKRG
TSIKKEWVDLLREMVLKLPEVANLGSLKALCDEDAEIDFFNNIVHLQKHRRARALSRFRN
VINASYMPEGITKKVFVPLFFNMLLEEHEGKGEHVKNVCIEALASISSHMEWNSYYSLLM
RCFNEMIKNPNKQKLLLRLICSILDQFHFSDANDSLDNVSNTGTTDSGTSILRRCSSSVS
ANEIQTCLQKVVLPKIHKLLSDSEKVNANINLAALRVLRLLPGDVMDSQLPSIVHRISNF
LKNRLESIREEARSALAACLKELGLEYLHFIVKVLRSTLKRGYELHVLGYTLNFILSKFL
VTPISGKLDYCLEDLLYIVQNDILGDVAEEKDVEKIASKMKETKKQKSFETLRLIAQSIT
FKSHALKLLSPVTAQFKKHLTPKTKTKLESMLTHIAAGIEYNPTVDQTDLFIFVYGLIED
GINEENGQGENLFITRVNGRRRNDSTRKAVSSGCVAGAKSVCSHLISVFALGIFQKRIKN
LKLGNNDAQMLSMLDPFVLLLGKCLNSKYEDVVSASLRCLTPLVRLPLPAIESQADNIKA
ALFGIAESSVNTGSSLMQSCLRLLTVLLRGTKITLSSDQLHLLIQLPLFVDLEKNPSFVA
LSLLKAIVNRKLVVPEIYDLVTRVAELMVTSQVEPIRHKCSKILLQFLLDYRLSEKRLQQ
HLDFLLSNLRYEHSSGRKSVLDMLHTIIVKFPKGVIDEQSQTFFVHLVVCLSNDQDNEVR
SLAGAAIKCLTGYISLHSFRSILEYSLSWYLGAKQQLWSAAAQVLGLLVEVMEKGFHKHI
NKILPVEVMEKEFHKHINRILPVTKCILESTINAVTDGQLDFSNETNIPLWKEAYYSLVM
LEKMLHQFHGLCFDRDLEDIWDAICELLLHPHMWLRCISSRLVAFYFAAVTEACSKNHEK
PFGTYYLIRPSRLFMIAVYLCCQMKTQLVDDTASNLITQNLVSTICGVHSLVGQTECADP
TQFWSTLEEHEQGCFLKAFELLDARKGRIMFLSLTSGICDKNNESPSKNIRYLLVSSLLK
KMGKIALQMEAIQMKIVFDSFGKISSEISQEDCLLHASEILLPLYKVCEGFSGRVIPENM
KQLAQEISERVRNKLGVQNYVLVYNDIRKNLKAKRDKRKHEEKRMAVTDPMRNAKRKLRI
AEKHRANKKRKMMTMKMGRWTHSKSK
NT seq
8181 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccccatcacaagctcaggccgtcaagtcgctcaacaaatccccaggacgccgc
cgttttgtcttcaagagcttctctcagagacttgaagaagttgaagtcgatgtattccga
agccttgataaagttaaaccagagccgcaagcgggctctacgtttttccgggactgcctc
gtagaatggagggaattgaacacggctgaggatttcatcgctttctatgagaaaatgacg
ccattggtccaaacattgcctttggtgttgttgcataaggaaaccataatctcagaactc
ctttctagattacagatgaaagcaaggttgtcgcttgaacccattctcaggttaattgca
gtcctgtgtagagatctccttgaggactttatcccgttcttgccaaggattgctgactct
ctagtgtctctcctcgaatgtggtgccgatagggagccagaggccattgagcagatcttc
acatcttggtcatctattatgatgtacttgcaaaaatatcttgtacaaaagcttgtgcat
gttctaaatgttactgtaaatttgagatattatccaaaagattacatccaagaatttatg
gcagaggggatgtcattcttgctgagaaatgcaccttttgagcagcttaaaaaaggtgtc
aaaaagatcatgtttgaagttgtgcagaaatcaatacctgtcagaaaatatggagtcagt
gctttactatattttgtcatgcgaggggcctcatcaaggttccattctaaagctgagcaa
gtgttgcatttattgatggacgacttgatacttggtattggtgaaaacttcagccagggt
tcagacactgttgttgaagtcttaatttctgcattacaaagattatgtgatgacttggac
tccaaggagttgaacataatgttcaattgcttatatcaggaaataactgactgtatgatt
aatggaggtgttgaacgtttaagctgcctgttgtcattgcttgtttctactgttcaagtc
aagaatggccaaagggtttctgattaccaacaaatgcttgaaattgtgggtttgcttgtg
cgaacatttatcatgccttctggcattacaatggcagaggaacattcatctgatgttgtg
gataaggttttgcagttaatgctctgtattcttagtggactgcacagttacaatgatatg
tcaaccatatctagttgttcattgcaatgggctcctgtatttgatctaaagaactcaagc
ttgttaggttttattcgacaacttttacaaaaggacgtttgcatactagatatcttcgca
gttaacattttaagggccatgaatgatttattagaaacttcacaggaagatgtaatttat
ttgttactcaccttcaatgaaaaactacaaatggaaacccaaagcttgaccttcttagat
agaacacgtgaaggagttccaaggattcaaggttttatgcgtggggctatcagcaattgg
gttggggttttaaagggtattgtaaatggggattcatcatccactttaattcatgaagct
gacttggccctgctgtggggagtcattaactgctttccacaaatagcagaatccgaagaa
gatttttcgctgttgatggatttgatggatgcagatgatcaaattctgatgattgaagct
gacaatattgcaggttttcctaaacacacttgggagagcctaattggtgctaccttaaat
tcctattacaaacttattcgtggtaaaaaatctgagcttgacgaaacaagcagatttttg
catcttggaaatagacacaaatcatgtccacaagtgttggttgctgttgctgattttttg
gattccgtgtatgggcctattatggaaggagacaccaagtctagaacttatcatccagaa
ctacaagcagataaagccatagatgctttggacatatttgctgataatttgtgccactca
gacagagggattcgtgcttcaactcttagaatattgtgtcactatgaaactctaaattgc
aatatttgcacagaggatgagccagttgcgaagaaactgagaactgaagtttctcttact
tgtcatgtggataaccaaggctttaatgttcttccactcctcctctcaatcgagtcaact
ccgctttcaatttctaccagtaggaaagttactctattgatttctagaatacagatgggc
ctctccactggaagaatagctgaagcttatctgccccttgttttgaatgggatgattggt
atcttccataaccggtttagttatctttggaatcctacatcagagtgccttgcagttctg
attagccaaaatactggacttgtatgggagagattacttcattattttgaacaatgccta
tcgagatttcaagcgtcttttgatcaagttgaggaagtaaattctaagttgaccaacaag
tcaagtgatctggttgaaggctttaatttgtgtattacttccaagtctgatagtacgcct
tctgcagcagtattatcttctttgcttcaatctttacaaagaattccaaccataattgaa
tccaagtctcgtcagattatacctttgtttttaaagtttctgggctacaattgcaaagac
tttaaaagcatcgggtctttcaatccgagtgtttgtaaaggcaaagagtggaaaggtgtc
ctcaaagaatggttaaacctgctgaaactgatgcacaaccttaagtccttctatcagaat
cagtttcttaaagaggtcttacaaaataggcttttggatgaaaatgatgctgaaatacag
acaaaggttcttgattgcctgttaatctggaaagatgatttcctgctcccatatagtcaa
caattgaaaaacctagtcagcttccataatttgagagaagaattaacaacatggagttta
tccagagagtctaatctaattgaagaagaacacagacctgaccttgtgcctatggttatc
cgtcttctgatgcccaaagttcgcaaattgaagaaacatgcttctcagaagctttcaaga
ttaaatcatcggaaggcagttcttagtttcatagctcaagttgaagttgaaaagcttcct
cttttctttgtgttgttaataaagcccttgcaaattgtttcaatgggaagtgacggtgct
gcaagctggttttggaccttgccaaacggttctttggctgaatttcaagcattggatttc
ttaaaatatttcactttgagcaatatatcagccctatcttggaagaaaagatctggtttt
cttcatgtgattgaagatatccttggagtttttgatgcgtctcatgttggcccctttctt
gattttctaatggggtgtgtcgttcgaatattaggaagctgcagtttaagtcttgatgtg
gcaaaaggcaatggatcttcggttgaaaattatccagatgtggaccttactttgcttgga
aaagacagtgcagtggaaaataatgttttgatctccacaactttgaggcagttaaaggat
ttgaggtctttatgtctgaaaattgtatcctttgttctcaataagtatgaagatcatgaa
tttagttgtgagttctgggacttattcttcatgtcatgcaagcctttaattgatggtttc
aagcaggaaggacccagcggccagaaacctagttcactattctcttgttttcttgctctg
tctagaagccaaaaacttgtaccactactgtatagggaacaaaaacttgttcctgatata
ctctcaattctaaccgtcacgtcagcatctaaagctattgtatcttgcgttcttaagttt
gttgagaaccttttgaatcttgatcacgagttggatgatgaagatagtgctgtaaaaaga
gttatactcccgaaccttgaagcacttattgatagcctgcatagtctttttcacagtaat
aatgctgccaagaggaaattgtttaaacacccaggagacgcagaaacaagaattttcaaa
tttttaccgaagtatataaaaagtgcagtgccagccaggaaatttgtggatatattgctt
ccagttttagcaaatggaactcaaaattcagatttttgttttgaagtggtgcaagtaatt
cgtgatattgttccagtattggggagtgagattacaaataaaattctgaatgcagtatct
cccctacttacttctactgatctagataagcgtgtttttatctgtgatcttctggatgct
gttgctagagtagacccttctgttcactttgtggcaaaacttgtccaggacttgaatgca
acctctaatacagaattgggtagcctggattatgacaatgttgtcaatgcttatgaaaag
atcagtgttgatatattctatacaattcgagaggatcatgcattggtcattttgtctcat
tgtgtctatgacatgtcatctgaagaattaatcttgaggcacagtgcttacaagtcattg
cgttcatttgttgaatttgctgccctaatacttggccaagtggtgagcaaccactgtgaa
atgcctgatatgcctgacaagatgttggcctctgataattgttattggacaagagcatgc
attcagagaataacaagcaagtttcttttgaaccatatgggtaatgctttgaagagagga
acttctattaaaaaggaatgggttgatttactaagagaaatggtgttaaaactcccagaa
gtggcaaatctgggttcattgaaggctctttgtgatgaagatgctgaaattgattttttc
aacaatatcgttcacttacagaaacataggagagcaagggctttgtcacgctttaggaat
gttatcaacgccagctatatgccagagggcatcacaaagaaagtgtttgtacccctcttt
ttcaatatgttgctggaggagcatgaaggaaaaggagaacatgtaaaaaatgtctgcata
gaggcccttgcttcaatttccagtcacatggaatggaattcatactactcattattgatg
agatgctttaatgagatgatcaagaatcctaataaacaaaagctccttctgaggctcatc
tgttctatcttggaccagtttcacttttcagatgccaacgactctttggataatgtttcc
aacacagggaccactgattctggcacgtcaatcttgcgtagatgtagtagttctgtttcg
gcaaatgaaatacagacatgccttcaaaaagttgtgcttcctaagatacataagttactg
agtgattctgagaaggtcaatgctaacatcaatcttgctgcactgagagtattaaggttg
ctaccgggagatgtaatggactcacagcttcctagcattgttcatcgaatttcaaatttt
ttgaagaatcgattagaaagcatccgtgaagaagctaggtccgctttggccgcttgtttg
aaggagctggggctggaatacttacattttatagtcaaggttttgcgaagtacattgaaa
cggggatatgagttacatgtgttgggatacacactgaactttattttgtcaaagtttctt
gtgactccaattagtgggaaattggactactgtttggaagatctcctttatattgtacag
aatgacattcttggagacgttgctgaggaaaaagatgttgaaaagattgcttccaagatg
aaagaaactaagaagcagaagtcttttgaaaccctgagattgattgctcaaagcataaca
ttcaaaagccacgccttgaaacttctatcccctgttactgctcaattcaagaaacatttg
acaccaaaaaccaagacaaaattggaaagtatgttaactcacatagcggctggtattgaa
tacaatccaactgttgatcagactgacctatttatatttgtatatggtctgattgaagat
ggaataaatgaagaaaatggccagggtgagaatttgtttattacacgggtaaatggacgc
cgtcgaaatgattcgactagaaaagctgtttcgtcaggctgtgttgcaggtgctaaatca
gtatgttcacatcttatttcagtgtttgctcttgggatatttcagaagcgtataaagaat
ttgaaattgggaaataacgatgcacaaatgttgtcaatgttagatccgttcgtcttactg
ttagggaagtgcttgaactccaagtatgaagatgtcgtatctgcatcacttagatgcctc
accccacttgtcaggttgcctttgcctgccatcgaatctcaggcagataatattaaggcc
gcactgtttggtattgctgaaagttcagttaatactggcagctctctaatgcagtcatgt
ctgaggctgttgactgtacttttgcgcggcaccaaaatcactctgtcatctgatcagcta
catctgttgattcagcttccactatttgttgatcttgagaagaatccctcctttgttgct
ctttcacttctaaaggcaattgttaaccgcaagctagttgttcccgagatatatgatctt
gtaactagagttgcagaattgatggtaacaagccaagtagaaccaattcgtcacaaatgt
agcaagattttattgcaattcttacttgattatcgtctctctgaaaaacgcttgcaacag
catttagattttctgctgtcaaatctgaggtatgagcattcgagtggaagaaaatccgtg
cttgacatgctccacacaattattgttaaatttccaaaaggcgttatagatgagcaatcc
cagactttttttgtccatttggtggtttgcttgtctaatgatcaagataatgaagttcgt
tccttggctggtgcagctataaaatgtctcaccggctatataagcctacattcatttcgt
tccattcttgagtacagcctatcttggtatttgggtgcaaagcaacaactgtggagtgct
gcagcacaggttttgggattactggttgaagtcatggagaaaggatttcacaagcatatc
aacaaaatattgccagttgaagtcatggagaaagaatttcataagcatatcaacagaata
ttaccagtgactaaatgtatcttagagtctaccatcaatgcagtcactgatgggcaacta
gatttttctaatgaaactaacattcctttatggaaggaggcatattattcgttagtgatg
ctggagaaaatgctgcatcagttccatggtctatgctttgatagggatcttgaggatata
tgggatgcaatttgtgaattactgctgcatccacacatgtggttacgttgcatttccagt
cgcctcgtagctttctactttgctgctgtcacagaggcatgctctaaaaatcatgaaaaa
ccatttgggacttactatcttattagaccaagtagacttttcatgatagctgtttatctc
tgctgccaaatgaagacacagcttgttgatgatactgccagtaatctgattacacaaaat
cttgtgtccactatttgtggggtgcattcgttggtgggacaaacagagtgtgcagatccc
acccagttctggtccacccttgaagagcatgagcagggctgttttcttaaagcttttgag
ttgctcgatgctagaaaaggaaggatcatgtttttatctcttacctctggaatatgcgac
aaaaataatgaaagcccctctaagaatattcggtacttgcttgtctccagcctgctcaaa
aaaatgggaaaaattgcccttcaaatggaggctattcagatgaaaattgtctttgatagt
tttggaaaaatttcatccgaaataagtcaggaagactgcctgcttcatgcctctgaaatc
ttgttgcccttgtataaagtttgcgaaggattttctgggagagtgattcctgaaaatatg
aagcaattagcgcaagaaatttctgaacgtgtacgaaataaactaggcgtacaaaattat
gtactggtttacaatgacatccggaagaatctcaaggcaaagagggataagaggaaacat
gaagaaaagcgcatggctgttaccgatcctatgcgaaatgcaaagagaaaattgaggatt
gcggagaagcatcgtgccaacaagaaaaggaagatgatgacaatgaaaatggggagatgg
acgcattccaagtcaaagtag
DBGET
integrated database retrieval system
