KEGG   Prunus dulcis (almond): 117621291
Entry
117621291         CDS       T07328                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
pdul  Prunus dulcis (almond)
Pathway
pdul03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pdul00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117621291
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pdul03041]
    117621291
Spliceosome [BR:pdul03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    117621291
 Complex C
   U5 SnRNP specific factors
    117621291
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 WD40_WDHD1_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_EIPR1 NBCH_WD40 Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_DCAF12 Beta-prop_RIG_1st Nbas_N RMC1_N PEP5_VPS11_N
Other DBs
NCBI-GeneID: 117621291
NCBI-ProteinID: XP_034207574
LinkDB
Position
1:5105490..5109344
AA seq 344 aa
MMQFAPSEGETALSVVGPRPMELSTHSARPAPGPNGKQRTSSLESPIMLLTGHQSAIYTM
KFNPTGTVVASGSHDKEIFLWNVHGECKNFMVLKGHKNAVLDLHWTTDGSQIISASPDKT
VGAWDVETGKRIKKMAEHSSFVNSCHPARRGPPLIVSGSDDGTAKLWDMRLRGAIQTFPD
KYQITAVSFSDASDKIFTGGIDNDIKVWDLRKAEVMMTLQGHQDMITGMSLSPDGSYLLT
NGMDCKLCIWDMRPYAPQNRCVKIMEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYVW
DTTSRRILYMLPGHTGSVNESVFHPNEPIIGSCGSDKQIYLGEI
NT seq 1035 nt   +upstreamnt  +downstreamnt
atgatgcaatttgctccaagtgagggtgaaactgctttgtccgtagttggtccaaggcca
atggagttgtctacgcatagtgctcgcccagcacctgggccaaatggaaaacaaaggact
tccagtttggaatcaccaatcatgttgttgacaggtcatcagagtgctatatacacaatg
aaatttaatcctactggaacagttgttgcctctgggtctcatgacaaagaaattttctta
tggaatgttcatggggaatgcaagaactttatggttctgaaggggcacaagaatgctgta
ttggatcttcactggacaactgatgggtctcagataatatcagcaagtccagacaagact
gtgggggcatgggatgttgaaacaggaaaaagaataaaaaagatggcagaacactcatca
tttgtgaattcttgccatcctgctcgaaggggaccacctcttattgtcagtggatctgat
gatggaactgccaaactatgggatatgcgtctgaggggtgccatccaaacatttcctgat
aaatatcaaattacagctgtcagcttctctgatgcatcagataaaatctttaccggaggg
attgacaatgatattaaagtttgggatttgcgcaaggctgaagtaatgatgacgcttcaa
ggccatcaagatatgataacaggtatgtcattgagtcccgatggctcttatcttctgact
aatggaatggactgcaagctctgcatttgggatatgcgcccgtatgcaccacagaatcgt
tgtgtgaagataatggaagggcaccagcacaattttgaaaagaacttgttgaaatgtggc
tggtcccctgatggaagcaaggtcacggctggaagttctgatcggatggtttacgtttgg
gatactacttctcgacgcatcttgtatatgcttcctggccacaccggatctgtcaatgag
tctgtattccatcccaatgaacccattattggatcttgcggtagtgataaacagatctat
ctgggggaaatctga

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