Prunus dulcis (almond): 117621378
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Entry
117621378 CDS
T07328
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117621378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117621378
03012 Translation factors [BR:
pdul03012
]
117621378
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117621378
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117621378
Translation factors [BR:
pdul03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117621378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_C
R3H
OB_NTP_bind
AAA_19
Ank_2
ATPase
HA2_N
Ank_5
nSTAND3
ResIII
AAA_22
AAA_23
Rad17
T2SSE
AAA_7
NPHP3_N
NACHT
Motif
Other DBs
NCBI-GeneID:
117621378
NCBI-ProteinID:
XP_034207705
LinkDB
All DBs
Position
3:complement(16660360..16669688)
Genome browser
AA seq
1265 aa
AA seq
DB search
MAKKNRGGQQQNSKVPESMRNRIAQLLSRFNSADDEVYTFEAGLSNLDRAEVHQQCRKMG
MKSKSKGSGKKRVVSVYKPKKKAAAVDGIPKLTHLTFSEGTKEVLRDLFMCYPPGDEVEG
REMYGTNSNENVKAKRKKDSMFCKPLMTKAEIAKKVQSLASRIKNSDKLRKITKEKSKLP
ITSYRDVITSAVESHQVILISGETGCGKTTQVPQFILDHMWGKGEACKIVCTQPRRISAA
SVAERISKERGENVGEDIGYKIRLESQGGRHSSIVLCTNGILLRLLVSRGTGRSKAGDSN
KETKQDVNDITHIIVDEIHERDHHSDLMLAIIRDMLSSHPHLHLILMSATVDAERFSHYF
GGCPIIRVPGFTYPVKTFYLEDVLSILKSVENNHLNTAVGLQNEDPDLTQELKLVLDEAI
NLAWSNDEFDPLLEFTSSERTRKVFNYQHSLTGLTPLMVFAGKGRTGDVCMLLSFGADCQ
LQANDGATALELAEREEQRETAEILKEHIENALSNSMKEQLLIDRYLQYFNPENVDFVLI
EQLLRKICSDSKDGAILVFLPGWDDIKKTQERLLTNPYFRNTSKVLIISLHSMVPSADQN
MVFKRPPPGCRKIVLSTNMAETAITIDDVVYVIDSGRMKEKNYDPYKNVSSLQSSWVSKA
SAKQRRGRAGRCQPGICYHLYSKVRAASLPDFQVPEIRRMPIEGLCLQVKLLDPDCNIED
FLIKTLDPPLSETIRNAVAVLQDIGALSLDEKLTVLGEKLGSLPVHPLTSKMLFFSILMN
CLDPALTLACATDFKDPFSLPVLPDDKKRAAAAKYELASLYGGHSDQLAVIAAFDIWKTA
KQRGQEKLFCSQYFVSSSTMHMLSRMRKQLQTELIRHGFIPEDVSRCSLNARNPGILRAV
LVAGLYPMVGRLLPARKKMKRSVVETPNGVKVCLNNHSMNYKLGFKVTSDDRPLIMFDEI
TRGDSGVMNIRNCTVIGPLPLLFLSTEISVAPSNNDDDDGYIDEGSDMDDNEDESDEDAM
EIDGKSGGQHKEKIMSSPDNSVTVIVDRWLQFGSKALDVAQIYCLRERLSAAILFKVTHP
RKVLPPGLGASVYAIACALSYDGLSGISFPKESEESPTLVENETVTDDSVLPLQDCYLHK
SIMCDILRDDAHVSNDTNEMHCYFLRSCTPAVNVAAKSSLSHSTAANGAVRFYVIGNGAA
KLSDPSSQSVQPPLDSAPITAHQKPPSQGPNLVGNGASTDASDGPRGESPVKRKKRRNKG
REQSS
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaagaacagaggcggccaacaacaaaacagtaaagttccagaaagcatgagg
aaccgaatagctcaattactctcccgcttcaattccgctgatgacgaagtttacacattt
gaggccggtctctcgaaccttgaccgtgctgaagtgcatcaacaatgcaggaaaatgggt
atgaaatccaagagtaaagggagtgggaaaaaacgtgttgtgtctgtttataaacctaaa
aagaaggctgcagccgttgatggtattccaaagctcactcatctgacattttccgaaggc
acaaaagaagtattgagggacttgttcatgtgttacccacccggtgatgaagtggagggc
agagaaatgtatgggacaaatagtaatgagaatgtgaaagccaagcggaagaaagacagt
atgttttgcaagcctttgatgaccaaggcagaaattgcaaagaaagtgcaatcacttgct
tctagaataaagaattccgataaattgagaaagatcaccaaagagaagtctaagcttcca
attacatcctacagggatgtcattacatcagcagttgaatctcatcaggtaattcttata
tctggtgagactgggtgcggaaagaccacacaggtcccacagtttattttggaccatatg
tggggtaagggggaggcatgtaaaatagtgtgcactcaacctcgacgtatctcagctgca
tcagttgccgaaagaatctctaaggaaagaggagaaaatgttggagaggatattggatac
aagatacggttggaaagtcaaggtggcaggcactcatcaattgtgctctgcacaaatggg
attctgttgaggttgttagtgtccagaggcactggtagatcaaaagcaggtgactcaaac
aaagaaaccaagcaagatgtcaatgacataactcacattattgtggatgaaattcatgaa
agggatcaccactcagatcttatgctggcaattataagagacatgctttcttcacaccct
catctacatctgatactgatgagtgcaactgttgatgctgaacggttttcacattatttc
ggtggatgcccaattatccgtgttcctggtttcacttatcctgtcaaaactttctatttg
gaggatgtactttctatcctgaaatccgtagaaaataatcaccttaatactgcagtaggt
ttacagaatgaagatcctgacttaacacaggaattgaagcttgttctagatgaagctatt
aatctggcttggtctaatgatgagtttgatccccttctagagtttacttcttctgaaaga
actcgcaaagtctttaattaccagcattctttaaccggacttacgccgttaatggtgttt
gctggaaagggtagaacaggagatgtttgcatgctgctatcttttggtgcggactgccaa
ttacaggccaatgatggagcaactgcattggagttggctgaacgggaagagcagcgagaa
actgctgagatattgaaagagcatattgaaaatgctctttctaactctatgaaagaacaa
ctgttaattgatagatatctccaatattttaatcctgaaaatgttgattttgttcttatt
gagcaattattaaggaaaatttgtagtgattcaaaagatggagccatccttgtgttcctt
ccagggtgggatgatataaaaaaaacccaggagagattactcacgaacccatatttcaga
aatacttctaaggttttgataatatctctacattcgatggttccatctgctgaccaaaac
atggtcttcaaacgcccccctcctggttgccgtaaaattgttctttcaactaatatggct
gaaactgccatcaccattgatgatgtcgtttatgttattgatagtggccggatgaaagaa
aaaaattatgatccttacaaaaatgtatcaagtcttcaatcttcctgggtgtcaaaagcg
agtgccaagcaacgacggggccgtgctggtcgttgtcagcctggaatctgttatcatctt
tattctaaagttcgagcagcttcattgccagattttcaggtgcctgagattaggagaatg
ccaattgaagggctttgcctgcaggtgaagttacttgatccagattgcaatatagaagat
ttcttgattaagacattggatcctccactttccgagaccatacgcaatgcagttgctgtt
cttcaagatattggggctttgtcacttgatgagaaacttacagtacttggggagaagcta
ggttctctacctgttcatccattgacgagcaagatgcttttcttttctatactgatgaac
tgtcttgacccagctttgactctggcatgtgctactgacttcaaggatccattttccctg
cctgtgttacctgatgataagaagagagccgctgctgctaaatatgaacttgcttcattg
tatggtgggcatagtgatcagctagcagtcatagcagcatttgacatatggaagactgct
aaacaacgaggtcaagagaaactgttctgttctcaatactttgtgtcttcaagtacgatg
catatgctatctcgtatgcgcaagcagctccagacagagctaattcggcatggttttatt
cctgaggatgtatcaagatgtagcttgaatgcacgtaacccaggaatactccgtgctgtt
ctcgtggccggtttatatccaatggtggggagattgcttcctgctcgcaagaagatgaaa
cgatctgttgtagaaactcctaatggggttaaagtttgtttaaacaaccactctatgaat
tataagttaggtttcaaggttaccagtgatgatcgtccattgattatgtttgatgagata
acccgtggggattcgggtgtgatgaacatacggaactgtactgttatcgggccacttccg
ttactatttctttcgacagaaatttctgttgctccatcaaacaatgatgatgatgatggt
tacattgatgaggggagtgatatggatgacaatgaggatgaaagtgatgaagatgcaatg
gagatagatggtaagtcaggtggacaacacaaggagaaaattatgtcatctcctgataat
tcagtcacagttatagtggatcggtggcttcaatttgggtcaaaagctctggacgttgct
cagatctactgcttgagagaacgtttatctgcagcaatcttattcaaagttacacatcca
aggaaagttttgcctcctggtcttggggcctcagtttatgctatagcctgtgctctatcg
tatgatggtctctctgggatctcatttccaaaggaatccgaggagtctccaactttggtg
gaaaatgaaactgtgactgacgactctgttttgccccttcaagattgctacttacacaaa
tcgattatgtgcgatattttaagggatgatgcacatgtaagcaatgacacaaatgaaatg
cactgttacttcctcagatcatgtactcctgccgtcaatgtagcagccaagtcgagttta
agtcacagtactgctgctaatggagcagtacggttttatgtgataggaaatggggcagca
aagttgagtgacccatcaagtcagagtgttcaaccaccgcttgattctgctcccatcacc
gctcaccagaagcctccatcacaaggtccaaatttagttggcaacggtgcaagcactgat
gcatcagatggtccaaggggagagtcgccagtgaagaggaagaagcgtaggaataagggt
agagaacaatcatcttga
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