Prunus dulcis (almond): 117621381
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Entry
117621381 CDS
T07328
Name
(RefSeq) probable ubiquitin conjugation factor E4 isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul04120
Ubiquitin mediated proteolysis
pdul04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117621381
04120 Ubiquitin mediated proteolysis
117621381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pdul04121
]
117621381
Enzymes [BR:
pdul01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117621381
Ubiquitin system [BR:
pdul04121
]
Ubiquitin ligases (E3)
U-box type E3
117621381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Sec20
Motif
Other DBs
NCBI-GeneID:
117621381
NCBI-ProteinID:
XP_034207713
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All DBs
Position
3:21639203..21645665
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AA seq
1028 aa
AA seq
DB search
MATPKPQRSREELEDIVLRKIFLVSLTDSSESDSRIVYLEMTAAEILSEGKELRLTRDLM
ESILIDRLSGDFASAEPPFQYLIGCYKRAYDEGKKIAAMKDKNLRSELESVVRQAKKLSV
SYCRIHLGNPDSFSNPNKSNASPLLPLIFSEGGGSVDGFGVSGSGGGIQCPPGFLDEFFT
DPDFDSLDPILKGLYEELREVVLKVSALGNFQQPLRALYFLVKLPVGARSLVNHPWWIPK
GVYLNGRVIERTSILGPFFHVSALPDHPIFKSQPDVGQQCFSEASTRRPADLLSSFTTIK
TVMNNLYDGLAEVLLLLLKNADTRENVLEYLAEVINKNSSRAHIQVDPLSCASSGMFVNL
SAVMLRLCEPFLDTNLTKRDKIDPKYVFYSNRLELRGLTALHASSEEVTEWINKDNMGNP
DGSRHNGDGENRLLQSQEATSSGNSVNVNPSNEKAKYSFICECFFMTARVLNLGLLKAFS
DFKHLVQDISRSEETLSTLKNMQGQSSSPQLEMDLARLEKEIELYSQEKLCYEAQILRDG
TLIQSALSFYRLMVVWLVRLVGGFKMPLPLTCPTEFASMPEHFVEDAMELLIFASRIPKA
LDGVLLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWMPRRSGSSITSTLFEGHQLSL
EYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHQNAWKQIAREEEKG
VYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPAQERQERTRLFHSQEN
IIRIDMKLANEDVSMLAFTTEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDP
EKYEFRPKQLLKQIVYIYVHLAKGDTENIFPAAISKDGRSYNEQLFSAAADVLRRIGEDG
RVIQEFIELGAKAKVAASEAMDTEAVLGDIPDEFLDPIQYTLMKDPVILPSSRMTVDRPV
IQRHLLSDNSDPFNRSHLTVDMLIPDNELKGRIQEFIRSQELKKRGEDLSMQSSKATIQT
TTSEMLID
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccccgaaaccccagaggtcccgggaggagttggaggacatagtcctccggaaa
atctttctcgtatcgctgaccgattcctccgaatccgattcccgaatcgtttacttggag
atgactgcagcagagattctgagcgagggcaaagagttgaggctcacgcgggaccttatg
gaatcgattctaattgatcggctttcgggcgattttgcctctgctgaaccgcctttccag
tacctcatcgggtgctacaaacgggcttatgacgagggtaagaagatcgctgccatgaaa
gataagaacttgaggtctgaattggaatctgtggttagacaagccaagaagctatcggtt
tcgtattgtaggattcatttggggaacccggattcgttttccaacccgaataagtcaaat
gcgtcgcctttattgcccttgattttttcagagggtgggggctcagttgatgggtttgga
gttagtggtagtggtgggggaatccagtgcccacccgggtttttggatgagttcttcacg
gaccccgatttcgatagcctggacccgattttgaaagggttgtatgaggaacttagggag
gttgtgcttaaggtttcggccctcggaaacttccagcagccattgagggctctgtatttt
ttggttaagttaccagttggtgcaaggtctcttgtcaatcacccttggtggattcccaaa
ggggtatacttgaatgggcgagttattgaaaggactagcattttaggtcctttcttccat
gtcagtgctctgccggatcatcctattttcaagagccagcctgatgtcgggcagcagtgc
ttttcagaagcttcaactcggcgaccagctgatctgctctcttcattcaccacaattaag
acagtcatgaataatttatatgatggccttgccgaagttcttctcttacttctgaaaaat
gcagacacccgtgagaatgttcttgagtatcttgcagaggtgatcaataaaaactcatca
agggctcatattcaggtggatcctctttcatgtgcaagttcaggcatgtttgtcaatctc
agtgctgtcatgcttcgtctttgtgagccgtttttagacacaaacttaacaaaaagggac
aaaattgatccaaaatatgtattttacagtaaccgtctggagttaagagggttgactgcg
ctacatgcatcatctgaagaagttactgaatggattaacaaagataatatggggaatcct
gatggctctagacacaatggtgatggtgaaaatcgccttttacaatctcaagaagccacc
agttctggaaatagtgtcaacgtgaacccaagcaatgaaaaagctaaatattcatttatt
tgtgaatgcttcttcatgactgcaagggtgctcaatctgggtttgctgaaagcattttct
gactttaaacatttagtacaggatatttcaaggtctgaagagactctctccacactcaaa
aacatgcaaggccagtcatcttctccacagttagagatggatttagctcgccttgagaaa
gaaatagagttgtattcacaggaaaagctttgttatgaagctcagatactaagggatggt
acacttatacagagtgctctttctttctatcgattgatggtggtgtggctagttcgcttg
gttggcggatttaaaatgcctctgcccttaacttgccctacggagtttgcttctatgcca
gagcattttgtggaagatgccatggaattgcttatatttgcttcccggattcccaaagct
ttggatggagtcttgttggatgattttatgaacttcattataatgttcatggcaagtcca
gaatatatcaggaacccttatctaagagcaaagatggttgaggtcctgaactgctggatg
cctcgcagaagtggatcatctattacttctaccctatttgaagggcaccaactgtctctt
gagtatcttgtgaggaatctcttgaagctatacgtcgacatcgagttcactggttctcac
acacagttctatgacaagtttaacatccgccacaatatcgctgaacttcttgaatatctg
tggcaagtccctagtcatcaaaatgcttggaaacagattgctagggaagaggagaagggc
gtttacttgaatttcttaaacttcttgatcaatgatagcatctatcttctggatgaaagt
cttaacaaaattcttgaactcaaagaactagaagctgagatgtcaaacactgcagaatgg
gaacgcaggcctgctcaagagaggcaggagaggacccgcctattccattctcaagagaat
attatccgaattgatatgaagttggcaaatgaagatgtgagtatgctggcatttactaca
gaacagattacagctcctttcctacttcctgagatggttgaaagggtggccagcatgctc
aattactttttgttgcaattagtaggccctcaaagaaagtctcttagtttgaaagaccct
gagaagtatgaattccggccaaagcaattgcttaagcagattgtatacatatacgttcat
ttggcgaagggtgatacagaaaatatttttccagctgccatctcaaaggatggtaggtca
tacaatgagcagttgtttagtgctgcagcggatgtcctaaggagaattggagaagatggg
agggtcatacaggaatttattgagcttggtgccaaagccaaagttgctgcttctgaggcc
atggacactgaagctgttctcggggacataccagatgaattccttgatccaattcagtac
actttaatgaaggatccagttatcttgccttcttcaagaatgacggtagaccgacctgtc
atccaaaggcatcttcttagtgataattcggatccgttcaaccgctcccatcttacggtg
gacatgctgataccagacaatgaattgaagggaagaatacaagagttcattaggtcccaa
gaattgaagaagcgcggggaagacctaagcatgcagagcagcaaggcaaccatacagacc
acaactagcgaaatgctaattgattag
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