Prunus dulcis (almond): 117622161
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Entry
117622161 CDS
T07328
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117622161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdul03041
]
117622161
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117622161
Spliceosome [BR:
pdul03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117622161
Complex B
117622161
Complex C
U2 SnRNP specific factors
117622161
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117622161
NCBI-ProteinID:
XP_034208627
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All DBs
Position
3:complement(661979..666938)
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AA seq
782 aa
AA seq
DB search
MSKRKFGFEGFGINKQSTFNFERSQQAPQRLYVPPSSRGQSHDNYEDTDLDNIDYDDNDG
SKDPGNNNNHDEGGGGGENDEIDPLDAFMESIHEEVRSAPPPKPKEKAEKYKDDEEDDPM
ESFLRAKKDVTLTLASDALHAGYDSDEEVYAAAKAVDAGMLEYDSDDNPIVLDKRKIEPI
AALDHSSIDYEPFNKDFYEEKESISGMSEEDVAEYKKSLAIRASGFDVPRPLKTFEECGF
SSQLVSAIKKQDYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE
LQKEEGPIGVICAPTRELAHQIYLEAKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIV
VATPGRLIDMLKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT
MPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVHVIPTDAEKLPWLLEKLPGMIDEGD
VLVFASKKAAVDEIESQLSQKGFKVTALHGDKDQASRMDILQKFKSGIYHVLIATDVAAR
GLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNSLVA
AGQNVSTELMDLAMKDGRFRSKRDSRKGGGKKGRGRGGGGGGGGGGRGVRGVDYGLGIGY
NSESNNSSSHTPTSRSAAVTSLRTGMMSQFKTKFVAAASDSPSQGSGNSSSVPQRPALRG
FVSGGSIGGDIFRTQATNTVTPAPTSVVNISSQNSGENASQKPSESSRDKPRERRRRSGW
DC
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagaaaattcggattcgaaggctttggcataaacaagcaatcgactttcaac
ttcgagcggtcccagcaagcgcctcagcgactatacgtgcctccgtcgtcgcggggacaa
agccacgacaactacgaagacaccgaccttgacaacatcgattacgacgataacgatggt
tccaaggaccctggcaataacaacaatcacgacgaaggtggcggcggcggcgaaaatgat
gaaattgaccctcttgacgcgttcatggagagcattcacgaggaggtgaggtcggcgccg
cccccgaagccgaaagagaaggctgagaagtacaaggacgatgaggaggatgatcctatg
gagagttttttgagggccaagaaggacgtgacgctgacgctggcctccgatgcgttacac
gctggatacgactccgacgaggaggtctatgcggctgcgaaggcggtcgatgcggggatg
ttggagtacgattcggatgataatcccattgttctggacaagaggaaaattgagccgatt
gcagctctcgatcatagttcgatcgactacgagccctttaataaggatttttacgaggag
aaagagtcaatttcagggatgagtgaggaggatgttgctgagtacaagaagagcttggcc
atccgtgcgtcaggttttgatgtaccgaggccacttaagacatttgaagagtgtggattt
tcttcacagctcgtgagtgcaataaagaaacaagattatgaaaagcctacacctatacag
tgccaagctctacccatagttctttctgggagagatatcattggtattgcaaaaactggt
tctggaaagactgcggcctttgtccttcctatgatagtccacattatggatcagccggaa
cttcagaaagaagagggtcctattggagtgatatgtgcacctactagagagctggcgcac
caaatatacttagaggccaagaaatttgccaaatcacatgggatacgtgtctctgctgta
tacggtggaatgtctaagcttgatcaattcaaagaacttaaggcaggatgtgagatagtt
gttgctactcctgggagattgatagacatgcttaaaatgaaggcactgacgatgctgagg
gcaacttacctagtacttgatgaggctgatcggatgtttgaccttgggtttgagcctcaa
attagatctattgttggtcagattcggccagaccgacagacattgctcttttctgcgaca
atgccccgtaaagttgaaaagttggccagggagattctctctgatccaataagagttaca
gtgggtgaggtgggaatggccaatgaggatatcactcaggtggttcatgtaattcctact
gatgctgagaagttgccctggcttcttgagaagttacctggaatgatcgatgagggtgat
gttttagtatttgcttcaaaaaaagctgcagtggatgagatcgaatcacagctttcccag
aaaggttttaaagtcacagctctgcatggtgacaaggaccaggcatctcggatggatatt
ttgcaaaaatttaaatctggcatttaccatgttcttattgcaactgatgttgctgctcgt
ggtcttgacatcaagtcaattaagtcagttgtgaactttgatattgcaaaagacatggac
atgcacgtccatcgaattggtagaacaggtcgtgctggtgataaagatgggactgcatac
acccttataactcagaaagaggcacggtttgctggtgaattggttaatagcttggttgct
gctggtcagaatgtctccacggagctcatggaccttgcaatgaaggatggcagattcagg
tctaaacgtgattcaagaaaaggaggtggaaagaagggtagagggaggggcggcggtggt
ggtggcggcggcggcggtcgaggtgtgcgtggggtggattatggtctgggtattggatat
aattcggaatccaataattcatcatctcatactcctactagtcgatctgctgcagtaact
tctctgaggacaggaatgatgtctcagttcaagaccaagtttgttgctgctgcatctgac
tctccaagtcagggttcaggtaacagctctagtgttccccagagaccagcattaagagga
tttgtatcgggtggctccattggcggggacatatttagaactcaggcaacaaatacagtt
actcctgctcctacatcagtcgtaaacatatcttctcagaactctggagaaaatgccagt
cagaagccttctgaaagttctagagataaacctagagaacgtcggaggcgctctggttgg
gactgttag
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