Prunus dulcis (almond): 117622865
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Entry
117622865 CDS
T07328
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117622865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdul03041
]
117622865
03009 Ribosome biogenesis [BR:
pdul03009
]
117622865
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117622865
Spliceosome [BR:
pdul03041
]
Complex A
U2 snRNP components
U2 related factors
117622865
Complex B
117622865
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
117622865
Ribosome biogenesis [BR:
pdul03009
]
Eukaryotic type
90S particles
Helicases
117622865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
SRP54
nSTAND3
T2SSE
FtsK_SpoIIIE
AAA_7
ABC_tran
AAA_30
AAA_16
NACHT
Motif
Other DBs
NCBI-GeneID:
117622865
NCBI-ProteinID:
XP_034209539
LinkDB
All DBs
Position
3:complement(473672..478086)
Genome browser
AA seq
730 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSSAKMSKSNGGAGATANHNAVSNLINRWTGKPYSQRYYEI
LEKRKTLPVWHQKEEFLQALKASQSLILVGETGSGKTTQIPQFVLEAVDSETPDKRRKMM
IACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT
DPLLERYSVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFSGA
PLMKVPGRLHPVEIFYTEEPERDYLEAAIRTVVQIHMYETPGDILVFLTGEEEIEDACRK
INKEVGNLGDQAGPVKVVPLYSTLPPAMQQKIFDPAPPPINEGGIPGRKIVVSTNIAETS
LTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE
KSFHNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLG
ALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQ
KAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKSADNVRQQLVRI
MARFSLKLCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL
DHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLANFPQCEAKRVLEKLYKKR
EDRDENKNRK
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagaggaaggtgagcctgttcgacgtggtggacgagacctcagtc
tcatcagcgaagatgagtaaatcgaacggtggtgcaggagccacagcgaatcataacgcg
gtgagcaatctgatcaataggtggaccggcaagccttactcgcagaggtattatgagatc
cttgagaagaggaagactttgcctgtttggcaccagaaagaggagttcttgcaagctctc
aaggccagccagtctcttattttggttggtgagactggtagtggtaaaaccacccagatc
cctcaatttgttttggaagctgttgattcggaaactccagataaacgtaggaagatgatg
attgcatgtacccaaccccgtagagtggctgcaatgtcagtgtcccgtcgtgttgctgaa
gagatggatgtaaccataggagaagaggttggttatagcatccgttttgaagactgcagc
agtgccagaacagtgctgaagtatctaacggatggaatgcttttaagagaagcaatgaca
gatccactattagagcgatacagtgtgataattcttgatgaggctcatgaaagaacttta
gcaacagatgttctattcgggcttctgaaggaagtattgagaaacagacctgacttgaag
ctggttgtgatgagtgccacacttgaggctgaaaagtttcagggttatttcagtggtgca
ccacttatgaaagttcctggaaggcttcatccagtggaaattttttacacagaggaacct
gaaagggattatttggaggcggcaattcgaacagtcgtgcagattcatatgtatgagacc
ccaggagatatacttgtttttctaacgggagaggaagagatagaagatgcatgccgcaaa
attaacaaagaagttggaaacctgggtgaccaggctggtcctgtgaaagtggtccctcta
tattcaactcttcctccagctatgcaacagaaaatatttgatcctgctcctcctcccata
aacgaaggcggaattcctggaaggaagattgtagtgtcaacaaacattgcagaaacttct
ctcactatagatggaattgtttatgttattgatccgggatttgctaaacaaaaagtttat
aacccacgagtgcgtgttgaatccttgttggtatctccaatttctaaggcaagtgcacat
cagaggtcagggcgtgctggaagaactcagccaggaaaatgtttcagactatatactgag
aaaagtttccataatgatcttcaaccacagacatatccagaaatattgagatcaaacctt
gcaaatacagttcttactttgaagaaactaggaatagatgatttggttcattttgatttt
atggatccccctgctcctgagacattgatgagagcattagaggttttgaattatttgggt
gcattggatgatgatggtaacttgacgaagctgggggagattatgagtgagttcccgtta
gatcctcagatgtcaaaaatgctggttgttagccccgagttcaactgctcaaatgaaatt
ttgtcaatatctgcaatgctttcagtacccaattgctttgtccggcctagggaggctcaa
aaagctgcagacgaggcaaaagctaggtttggacacattgatggagatcatctcacgctt
ctgaacgtgtatcatgcatacaagcaaaacaatgaggatccatcgtggtgctacgagaac
tttgtcaatcagagggcattgaagtctgcagacaacgtcaggcagcaactagtgcgcata
atggctcggtttagcctgaagttatgcagtactgatttcaatagtcgtgactactacata
aacataagaaaagccatgctagctggatatttcatgcaggtggctcacctggaacgcact
ggacactacctgacagtgaaagataaccaggtggtacatttgcatccgtcaaattgcttg
gatcataaaccagaatgggtgatttacaacgaatatgtcttgacaagcaggaattttatc
cgtacagtgacagatattcgtggggagtggcttgttgatatagcaccccactactatgat
ttggcgaattttccccagtgtgaagccaagcgtgttcttgagaagctttacaagaagcgg
gaggacagggatgaaaacaaaaacagaaaatga
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