Prunus dulcis (almond): 117622868
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Entry
117622868 CDS
T07328
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117622868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pdul04121
]
117622868
03036 Chromosome and associated proteins [BR:
pdul03036
]
117622868
Enzymes [BR:
pdul01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117622868
Ubiquitin system [BR:
pdul04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117622868
Chromosome and associated proteins [BR:
pdul03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
117622868
Noncanonical PRC1 (PRC1.1)
117622868
Noncanonical PRC1 (PRC1.3/1.5)
117622868
Noncanonical PRC1 (PRC1.6)
117622868
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-rbx1
zf-RING_4
Cloacin
Motif
Other DBs
NCBI-GeneID:
117622868
NCBI-ProteinID:
XP_034209549
LinkDB
All DBs
Position
3:12463484..12472265
Genome browser
AA seq
495 aa
AA seq
DB search
MPAQKRSLPESLSDSDDEDPTHIHHHQQAKQSRAQDEYQLLQEEEKVVAVEENEENEEEE
EEEEEEEEHDRDEAGDSEGSPSSTSEEKPEFLFVQLSEIRKDVHCPICLGIIKKTRTVME
CLHRFCRECIDKSMRMGYPLNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEE
ELAFHEEERTRNEQIQASIAQIFQRQSEALIRRRTFGKDTPDAFITRSQRNNRSSFLRRR
SSRATEIQGSVDNEDENDNNNMGKNSSSTDERRTEVTPRRLRRRAGSRSSQPSSSLANSS
GGCTENDLEVNRENRGISPGIVWSSEMLAWGRGGARSHTRHGISSGCSNKNSRSTRLSKL
VDYLRSIEENNDELDVHLMLISLDKRCTPSLQQPHLCCRPSLSVKHLCDYVSRQTPLLAE
EVEFLAVKGYHSSNDEKLTLNPSSLMNDVDSAPLLVDPCRYDLQILQAEETLGGVKAICT
SSRDHLILAYRRKEI
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcacagaagcgttctttgccagagagcctcagcgacagcgatgatgaagaccca
acacatatccaccaccaccaacaagccaagcaatctcgagctcaagatgaataccaacta
ctgcaagaagaagaaaaagtagtagcagtagaggaaaatgaagaaaatgaagaagaagaa
gaagaagaagaagaagaggaggaacacgatcgagatgaagctggcgattctgagggaagc
ccatcttctacttctgaagaaaaacccgaatttttattcgtacaactgtcagaaattcgt
aaagatgtacactgtccaatatgtcttgggattattaaaaaaacaaggactgtaatggaa
tgcctacacaggttttgcagggagtgtatagacaagtctatgcggatggggtatccactg
aacaatgaatgccctgcttgccgcacacactgtgccagtcgacgttctttgagagatgat
ccaaattatgatgccctaatagcagctttatatccagatattgagaaatacgaggaggag
gaattggctttccatgaagaagagaggactcgaaacgagcagatccaagcatcaattgcc
caaatttttcaacgacaatcagaagctctaatcaggagacgcacatttggaaaagataca
ccagatgcatttattacgagatcgcagcgcaataatcggagttcctttttaaggagacgg
agctctcgagccactgaaattcaaggatctgtagacaatgaggatgaaaatgacaataat
aacatgggcaaaaattcatcttccactgatgagcgacgtactgaagttacgccaagacgg
ctgaggagacgggcaggatctcgatcctctcagccttcttcatcgctggccaattcaagt
ggcggatgcactgaaaatgatttagaagtaaaccgagagaaccgcggaatttctcctggt
attgtgtggagctctgaaatgcttgcttgggggcggggtggtgctcgaagtcacacacgg
catggcatttctagtggttgcagcaataagaattctcgaagcactcgcttatcaaagttg
gttgattatctccggagcatagaggaaaacaatgatgagttagatgttcatctcatgctt
atttctttggataaaagatgtacaccaagtttgcagcagccgcacctatgctgtcggcca
agtttgtcagtcaagcacctttgtgattatgtatctcgccagacgcctttgctggcagaa
gaagttgaatttttggcagtcaaagggtatcacagttccaatgacgagaagttgacccta
aacccttcatccttaatgaatgatgtagattctgcaccccttctagttgatccatgcaga
tatgacctgcaaattctgcaagcagaagaaactttgggaggggttaaagccatttgcact
tccagcagggaccatttgattctagcatacagacggaaggagatttag
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