KEGG   Prunus dulcis (almond): 117622975
Entry
117622975         CDS       T07328                                 
Name
(RefSeq) protein transport protein SEC13 homolog B-like
  KO
K14004  protein transport protein SEC13
Organism
pdul  Prunus dulcis (almond)
Pathway
pdul03013  Nucleocytoplasmic transport
pdul04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pdul00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    117622975
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    117622975
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pdul03019]
    117622975
   04131 Membrane trafficking [BR:pdul04131]
    117622975
Messenger RNA biogenesis [BR:pdul03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     117622975
Membrane trafficking [BR:pdul04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    117622975
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    117622975
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    117622975
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR35_TULP_N Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd Beta-prop_Vps41 ANAPC4_WD40 WD40_Gbeta Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd WDR55 EIF3I Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_HPS5 Beta-prop_WDR41 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 117622975
NCBI-ProteinID: XP_034209682
LinkDB
Position
3:4299584..4301425
AA seq 301 aa
MPAQKVETGHQDTIHDVVMDYYGKRLATGSADNTVKIIGVSNSASQHLATLTGHQGPVWQ
VAWAHPKFGSLLASCSYDGRVILWKEGNQNEWIQAHIFDDHKSSVNSIAWAPHELGLCLA
CGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGLLDPVQKLCS
GGCDNTVKVWKLGNGVWKLDCFPALQMHVDWVRDVAWAPNLGLPKSTIASASQDGKVIIW
TVAKDGDQWDGKVLHDFNSPVYKVSWSLTGNIIAVADGNNNVTLWKEVVDGEWQQVTTVE
P
NT seq 906 nt   +upstreamnt  +downstreamnt
atgcctgcacaaaaggttgagactggtcaccaagacactatccacgatgtggttatggac
tactatggtaagcgtctcgccacaggttcggcggacaacaccgttaagataatcggagtc
agcaactcggcctctcaacatcttgcaactcttactggtcaccagggacctgtttggcag
gttgcttgggctcaccccaagttcgggtctttacttgcttcctgttcttatgatgggcgt
gttatactgtggaaggaagggaatcagaatgagtggatccaggcccatatttttgatgac
cacaagtcgtctgtcaactcaattgcttgggctcctcatgaactcggtctctgtttggcg
tgcggttcttctgatgggaacatttcggttttcactgcaagggcggatggtggttgggat
acctcgaggattgaccaagctcacccagttggtgttacctctgtttcatgggctccctca
acagcccctggtgctcttgttggttctggtctgcttgaccctgttcagaagctttgttct
ggtggttgtgataatactgtgaaggtgtggaagcttggtaatggggtttggaagctggac
tgctttccggctcttcaaatgcatgttgattgggttagggatgttgcttgggctcccaac
ttgggactgccaaaatctacaattgccagtgcctcacaggatgggaaagttattatatgg
actgtggccaaggatggggatcaatgggacggtaaggtgctgcatgatttcaattcacct
gtttataaggtctcatggtcgctgactggaaacataatagccgtggctgatgggaacaac
aacgtaacattatggaaggaagtagtagacggggagtggcaacaagtgacaacagttgag
ccgtag

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