KEGG   Prunus dulcis (almond): 117623025
Entry
117623025         CDS       T07328                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
  KO
K10752  histone-binding protein RBBP4
Organism
pdul  Prunus dulcis (almond)
Pathway
pdul03082  ATP-dependent chromatin remodeling
pdul03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pdul00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    117623025
   03083 Polycomb repressive complex
    117623025
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pdul03036]
    117623025
Chromosome and associated proteins [BR:pdul03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     117623025
  Histone modification proteins
   HAT complexes
    HATB complex
     117623025
   HDAC complexes
    Sin3A-HDAC complex
     117623025
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     117623025
    PRC2.2
     117623025
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     117623025
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    117623025
  Chromatin remodeling factors
   NuRD complex
    117623025
   NuRF complex
    117623025
   NuRF complex (fruit fly)
    117623025
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_EIPR1 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WD40_WDHD1_1st WDR55 EIF3I Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd eIF2A WD40_RFWD3 ANAPC4_WD40 Beta-prop_WDR35_TULP_N Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_IP5PC_F
Other DBs
NCBI-GeneID: 117623025
NCBI-ProteinID: XP_034209751
LinkDB
Position
3:3374838..3380760
AA seq 468 aa
MKEMRGKGAEETVNERYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRL
YLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIR
ELPQNSKIVATHTDSPDVLIWDIEAQPNRHAVLGASNSRPDLLLTGHQDYAEFALAMCHS
EPFVLSGGKDKSVILWSIHDHISSLASDPGSARSPGSGGANAKHPSKTGGSNDKPTDSPS
VEPRGIYQGHGDTVEDVQFCPTSAQEFCSVGDDSCLILWDTRAGSSPVVKVEKAHDADLH
CVDWNPNDVNLILTGSADNTVRMFDRRNLTSGQVGSPIHTFEGHNAAVLCVQWSPDKSSV
FGSSAEDGVLNIWDHEKIGKKQDSVGSKPSNAPPGLFFRHAGHRDKIVDFHWNASDPWTI
VSVSDDCGSTGGGGTLQIWRMIDLIYRPEEEVLAELDTFKSHLMTCQS
NT seq 1407 nt   +upstreamnt  +downstreamnt
atgaaggaaatgagagggaaaggtgcggaggagacggtgaacgagagatacacacagtgg
aagtcgctggtgccagtgctctacgactggctcgccaaccacaacctcgtttggccttct
ctctcttgcagatggggtccgcaactagagcaagccacttacaagaaccgtcagcgcctg
tatctttccgaacagactgatggcagtgttccaaatacacttgtcattgcgaactgtgaa
gttgtcaaacctagggttgcagctgcagagcacatatcacagttcaatgaagaagcgcgc
tctccttttgtaaaaaagtataaaactattatacatcctggtgaggtgaacagaataagg
gaactcccgcagaatagtaagatagtggccacacacactgacagtcctgatgttctcatt
tgggatattgaggctcaacctaatcgacatgctgtcctgggagcttcaaattctcgtcca
gatctgctattgaccggtcatcaagattatgccgaattcgctcttgctatgtgccactct
gaaccctttgtgctctctggagggaaggataaatcagtgattttgtggagtattcatgat
catatctcatctttagcatcagatccagggtccgcaaggtctccaggatctggaggtgcc
aatgctaaacatccctctaagactggtgggagtaatgacaaacccacagacagcccttct
gttgagccacggggtatctatcaagggcatggggatactgttgaggatgtgcaattctgc
ccaactagtgcacaagagttctgtagtgtaggcgatgattcttgcctcatactgtgggat
acaagagctggctctagtccagttgtcaaggttgagaaagctcatgatgctgatcttcat
tgtgttgattggaatccgaatgatgtcaatctcattcttacagggtctgctgataatact
gttcgcatgtttgatcgccggaacctcacctccgggcaagttggatcacccattcataca
tttgagggtcataatgcagctgtcctctgtgtacagtggtctcctgacaagtcatctgtc
tttgggagttctgccgaggatggtgtattaaacatctgggatcatgaaaagattggtaag
aagcaagactctgttggatcaaagccgtcaaatgctcctccaggattgttcttccgacat
gctggtcatagggacaagattgttgattttcattggaatgcatctgatccgtggacaata
gttagtgtctctgatgattgtggaagtaccggaggtggtggtacactccagatatggcgg
atgattgatttgatttacaggcccgaggaagaggtcctcgcagagctggatacgttcaaa
tcacacctaatgacatgccagtcgtga

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