Prunus dulcis (almond): 117623149
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Entry
117623149 CDS
T07328
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117623149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdul03041
]
117623149
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117623149
Spliceosome [BR:
pdul03041
]
Complex C
Other components
Step II factors
117623149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA
AAA_16
Cas3-like_C_2
AAA_30
ABC_tran
TsaE
nSTAND3
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
117623149
NCBI-ProteinID:
XP_034209950
LinkDB
All DBs
Position
1:complement(33146151..33149718)
Genome browser
AA seq
1076 aa
AA seq
DB search
MAAATEDVFTKLDHLSLLAKVVSELETHTGLGDVVLAEFITDLGRSCETVDEFNSKLQEN
GAQMADYFVRTLFAIIHAISRPKPEKVSKKDRVFERRRSDEDRERRHADLGNKRNRDGCE
LYTVHKGRVARVMDNGCFVQLNDQGEREGLVHVSQISNRRIRNAEDVVKRDQEVYVKVVS
VSGRKLSLSMRDVDQRTGKDLLPLEKKSSEGDGLWTNPLASKDRPVTRTGISGIRIEEED
DVFVPSRRRPLKRMSSPEKWEAQQLIASGVLSVTEYPMYDEEEANGMLYQEEGDEEETEV
ETREDKPGFLEYSLDMSPVKILKNPEGSLSRAAALRSALAKEDREVSRLAKTMLNSIPKD
LNRPWEDPMPEAGERQFALELRGVGLSGYEMPEWKKDALGKTISFGQRSKLSIQEQRKSL
PVYKLKEQLIEAVRTNPVLVLIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMS
VAKRVAEEVGCRLGEEVGYTIRFEDCTGPDTVIKYMTDGMLLREIMIDENLSQYSVVMLD
EAHERTVATDVLFGLLKQLLDRRSDFRLIATSATLDAERFSEYFCDCKIFTIPGRPFPVE
KLYTKQPESDYLDAALITVLQIHLKEPEGDILLFLTGQEEIDFACQTLYERMKSLGKNVP
ELIILPAYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVY
NPKLGLDSLIITPISQASAEQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTTPEIQRINL
ASTALMMKAMGINDLLKFDFMDSPPRQALVSAMEQLYNLGSLDEEGLLTRLGRKMAEFPL
EPPLSKMLLASVDLGCSDEMLTIIAMTQTGNMFHRPREKQAQADQKRAKFFQPEGDHLTL
LALYEAWKASNFSGPWCFNNFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKHYTKIRK
AITAGFFFHAARKDPQQEGGCYRTLVENQQVYIHPSSALFQKQPDWVIYHELVMTSKEYM
REVTAIDPKWLVELAPRSFKFAEANKMSKRKRQERIEPLYDRYNEPNSWRLSRRRA
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgccactgaagatgttttcacgaagctcgaccacctttccttgctcgccaag
gtagtttcagagctcgaaactcatacggggttgggggacgttgttcttgcagagttcatc
actgacttgggacgaagttgcgagactgtcgacgagttcaattccaaattgcaggaaaac
ggtgcccagatggcggattactttgtccgtacactcttcgccatcattcacgcaatcagt
cgtccgaagcctgagaaggtctcgaagaaagacagagtctttgagcggcgtagaagtgat
gaagacagggaaagaaggcatgcggatttaggcaataaacgaaacagagatgggtgtgaa
ttgtatactgttcataagggtagggtggctagagtgatggacaacggttgctttgttcag
ttgaatgatcagggagagagggagggtttggttcatgtttcccagatttcgaatcggaga
attcgtaatgccgaggatgtggtgaagagggatcaggaagtttatgttaaggtggtttcg
gtttcgggtaggaagttgagtctttcgatgagggatgttgatcagcgaactgggaaggat
ttgcttcccttggagaagaagagctcggagggtgacggtctttggacaaacccattggcg
tcaaaggataggcctgtgactaggactggtatttctgggattaggattgaggaagaggat
gatgtttttgtcccatcacgccgccggccattgaagagaatgagctcgcccgagaagtgg
gaagcccagcagttgattgcctctggtgttttgagcgttacagagtatccaatgtatgat
gaagaagaagcaaatggtatgctttatcaagaagagggagatgaggaagagactgaggtt
gaaaccagggaggacaagccggggtttttggaatattctttggacatgtcccctgtgaag
atcttgaagaatccagaagggtcattaagccgcgcagctgcacttcgatctgcgctagct
aaggaggatagagaagtgagcaggctggcaaaaaccatgttgaattctatcccaaaggat
ctgaatcgtccctgggaagatccaatgccagaggctggtgagaggcaatttgcactagag
ctaagaggtgtgggtttgtcaggctatgaaatgcccgagtggaagaaggatgctttaggg
aaaaccatcagttttgggcagaggtcaaagctctcaattcaggaacagaggaagagcttg
cctgtctacaagctgaaggaacaactgattgaggcggtgcgtactaatccagtgctcgtc
ctcattggtgagactggttctggtaagacaacccaggtaacgcagtaccttgcagaagcg
ggttacacgacaaagggcaagattggatgtacgcagccacgtagggtggctgcgatgtct
gtggccaagagggttgctgaagaggttggttgccgtttgggagaggaagttggctataca
attcgtttcgaggattgcactggaccagatactgtcatcaagtacatgaccgacggtatg
cttcttagggagattatgattgatgagaacctttctcaatattccgtggtcatgcttgac
gaagctcacgagaggacggtcgctacagacgtgctttttggtttacttaagcagcttttg
gaccggagatcagactttcgtttgattgccacatctgctactctggatgcagagaggttt
tcagaatatttctgtgactgtaaaatcttcaccatccccgggaggccttttcccgtagag
aaattatacaccaagcagccagaaagtgattaccttgacgcagctctaatcactgtccta
caaatccacttaaaagaaccagaaggtgacatccttctcttcttgactggacaagaagag
attgattttgcctgccagactctatatgagaggatgaaaagtcttggtaaaaatgttcct
gagttgattattctaccagcatacagcgcccttccaagtgaaatgcagtcgaggatattt
gatcctgctccaccagggaagaggaaagtagttgtggctactaatattgctgaggcatca
ctgaccattgatgggatattttatgtaattgatccggggtttgctaaacaaaatgtttat
aacccaaagctggggctcgactcactgatcataactccaatttcacaagcgtcggctgag
caacgagctgggcgagcagggcgtacaggccctgggaaatgttaccgcctctacactgag
agtgcataccgcaacgagatgtccccaactacaactccagaaatccagaggataaatctg
gcgtcgactgcacttatgatgaaagctatggggataaatgatctcctgaaatttgatttt
atggattctcctccacgccaagcactcgtttctgccatggaacaactgtacaatttagga
tcactagatgaggaggggctgctgaccagattgggtaggaaaatggccgagtttcctctg
gaaccacccctgtctaagatgctactcgccagcgtggaccttggatgcagtgatgagatg
ttgaccatcattgcaatgactcagacaggcaatatgtttcacaggccaagggaaaaacaa
gcccaggcagatcagaagagagccaagttctttcagccagagggagaccacctaacttta
cttgcactctatgaggcttggaaagcaagtaacttttcagggccatggtgttttaacaac
tttgttcagtctcgatccttgaggagggcacaggatgtgagaaagcagcttctgagcatc
atggacaagtacaaactggacgttgtcagcgcaggaaagcactatacaaagatcaggaag
gccattactgcagggttcttctttcatgctgctagaaaggacccgcagcaggagggtggc
tgctacagaaccctggtggagaaccagcaggtttatatccatccaagcagtgctctgttc
cagaaacaaccagattgggtcatctaccatgagctggttatgacctcaaaagagtacatg
cgcgaggtgacagccatagacccaaaatggctggtggaactggcaccaaggtccttcaaa
tttgcagaggctaacaagatgagcaagcgcaagcgtcaagaacgcattgagccgctatat
gacagatacaatgagcctaactcttggcgcctcagtaggcgtcgtgcttga
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