Prunus dulcis (almond): 117623310
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Entry
117623310 CDS
T07328
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117623310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdul03041
]
117623310
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117623310
Spliceosome [BR:
pdul03041
]
Complex C
Other components
Step II factors
117623310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
Sigma54_activ_2
nSTAND3
Cas3-like_C_2
AAA_30
AAA_16
ABC_tran
ATPase
SLFN-g3_helicase
SRP54
NB-ARC
T2SSE
TsaE
PhoH
AAA_33
AAA_7
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
117623310
NCBI-ProteinID:
XP_034210126
LinkDB
All DBs
Position
1:complement(6279584..6283004)
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AA seq
926 aa
AA seq
DB search
MVFTYKPLIDGLCLKFCLLKFLERERESFVFILKNGCFYADRVLAEFITEMGQNCEAVDD
FRAKLKQNGANMPEYLLHILLEIIHNILPPKKASQKRKDSPAMAITDAMQIHRESKEEEK
RSKRQRVNNCYEGIASGVFGAATYDDEVGLRNREEDFGEEIEMELDEDPLELLRGVLSID
RSPVKIVKNPIGSLSRAAALQSALQKEGREIRKVQERMKRNSIPMDLNRAWEDPMAERGD
RYLAQELRGAAGFSAFDIDKHEWKKSAYEGALSFGQRSSLSILERRQSLPIYKLKNELVN
AVNENQVLVVVGETGSGKTTQVAQYLAEAGYSTKGIIGCTQPRRVAATSVAKRVAEEVGC
RLGEEVGYSIRFDDCTGLDTLIKYMTDGMLFREILMDKNLSQYSVIMLDEAHERTVNTDV
LFGMLKQLVKRRPDLRLIVTSATLDAEKFSKYFFNCMIFTVPGRTYPVDTLYAKQPESDY
LDGAILTVLQLHLSEPEGDILVFLTGEEEIEFACQSLYERMKELGKDVPELIILPAYGAQ
PSAEQSKIFKPAPPGKRKVVVATNIAETSLTIDGIFYVIDPGFAKINVYNPKQGVDLLVV
TPISQASASQRAGRAGRTGPGKCYRLYTESAFHNEMSPNTVPEIQRSNLVHTTLMLKAMG
INDLKSFDFMDPPSPEALASAVEQLKMLGALDEEEFLTKLGSRMAVLPLDPPLSKMLLAS
ANLGCSDEIVTIIAMLQAGNTFYRPKEKQAQADLKKAKFLQPEGDHLTLLVVYEAWKAKN
FSSPWCSENFVQFRSLSRARDIRKQLLTVMDKYELEVVSAGKDRTMIRKAIITGCFFHVA
KKEPREGYRTIVDKQVVYIHPSSVLFQRQPDWVIYNELVMTTKEYMREVSAIDPKWLMEQ
VPRFFKAADPTKMSNRKCRAKLLASE
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggtatttacatacaaaccactcattgatggtttatgtctgaaattttgtctactcaaa
tttttagagagagagagagagagctttgttttcatcttaaagaatggctgtttctacgca
gacagagttttggcagagttcataaccgagatgggtcaaaactgtgaggccgtggacgat
ttccgtgcaaagttaaagcaaaacggagcaaacatgcctgaatatctcctgcatatattg
ttggagatcattcacaacattcttcctccaaaaaaggcttctcagaagcgaaaggacagc
ccggccatggcgatcaccgatgctatgcaaattcatagagagagtaaagaagaagaaaaa
aggagcaagaggcagagggttaacaattgttatgaagggatcgcctctggtgtttttggg
gctgcaacatatgatgatgaagttggattgcgaaatcgagaagaggatttcggggaagag
attgaaatggagctggatgaggacccattagaacttctgcgtggagtcttatcaattgat
aggtcacctgttaagattgtcaagaatccaattgggtcattgagccgtgcagctgcactt
cagtctgcgcttcaaaaggagggtagagaaataagaaaagtgcaagaaagaatgaagcgt
aattcaattccaatggatcttaatcgtgcttgggaagaccctatggcagagagaggtgat
agatatctcgcacaagaacttcggggtgctgctggcttttcggctttcgacattgacaag
catgagtggaagaagagtgcttatgaaggagccctgagttttgggcagagatcaagcctt
tccattcttgaacggcgtcagagcttaccaatctacaaattgaagaatgagctggttaat
gctgtgaacgaaaatcaggtgcttgttgttgttggtgagactggttcaggtaaaacaacc
caggtagctcagtatcttgctgaagcaggttacagcacaaagggcataattggatgtact
caaccgcgtagagttgcagccacttctgtggccaagagggttgctgaagaagttggttgt
agattaggggaggaagttgggtattctattcgatttgatgattgtactggactggatact
ttgattaagtacatgactgatgggatgctttttcgggagattttgatggacaaaaacctc
tctcagtactctgtgatcatgcttgatgaagcccatgaaagaacagtcaatactgatgtt
cttttcggaatgctgaagcaacttgttaaaagacgacctgatcttcgtttgattgttacg
tctgcaacactggatgcagagaagttttcgaagtatttcttcaattgtatgatattcact
gttcctggtagaacttatcctgtagacacactgtacgcgaagcagcctgaaagtgattac
ttggatggagctatattgactgttctgcaacttcacttgagtgaacctgaaggtgacata
cttgtcttcttgactggtgaggaggagattgaatttgcttgtcagtctctgtatgaaagg
atgaaagaactaggtaaagatgttccggaattgattatcctaccagcttatggtgcccaa
ccgagtgcagagcagtcaaagatctttaagcctgctcctccagggaagcgaaaagtggtt
gtggctaccaatattgctgaaacttctttgaccattgatgggatattttacgtaattgat
ccagggtttgcaaagataaatgtatataatccgaagcaaggggttgatttgctggttgta
acaccaatttcacaggcatcagccagtcaacgagctgggcgtgctgggcgtacagggcca
ggaaaatgttaccgcctttacactgagagtgcttttcacaatgagatgtctcctaataca
gttccagaaatccaaagatcaaatcttgtacatactacactgatgttgaaagctatggga
ataaatgatcttaaatcttttgattttatggatcccccatcacccgaagcacttgcgtct
gccgtggaacaactgaagatgctaggagccttggatgaagaggagtttctgaccaaattg
ggtagtagaatggccgtgctgcctctggatccacccttgtctaaaatgctgcttgccagt
gcgaaccttggatgcagtgatgaaattgtgaccatcattgccatgcttcaggcaggcaat
accttctacaggcctaaggaaaaacaagcgcaagcagatttgaagaaggccaagtttcta
cagcctgagggagaccatctgactttacttgttgtttatgaggcttggaaagctaagaat
ttttctagcccctggtgttcagagaactttgtccagtttcggtcattgagtagggcaagg
gatatcaggaaacagcttcttactgtcatggacaagtatgaattagaggttgtaagtgca
ggaaaagatcgaacaatgatcagaaaagcgattataactggatgcttctttcatgttgct
aaaaaggaaccacgtgagggttatagaaccatagtcgacaagcaggtagtttatatccac
ccaagcagtgttcttttccagagacagccagattgggtcatctacaatgagctggtgatg
accacaaaggagtacatgcgcgaggtcagcgctatagatcccaagtggcttatggaacag
gtgccaagattctttaaggctgcagatcctacaaagatgagcaaccgcaaatgccgagcc
aaactcttggcgtctgagtag
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