Prunus dulcis (almond): 117623548
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Entry
117623548 CDS
T07328
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117623548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdul03041
]
117623548
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117623548
Spliceosome [BR:
pdul03041
]
Complex C
Other components
Step II factors
117623548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
AAA_24
AAA_30
T2SSE
Flavi_DEAD
nSTAND3
Microtub_bd
ATPase
AAA_16
SRP54
Sigma54_activ_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
117623548
NCBI-ProteinID:
XP_034210461
LinkDB
All DBs
Position
1:complement(21147901..21157054)
Genome browser
AA seq
1302 aa
AA seq
DB search
MEGRANAEPIDLDKTTVTLEPEVNNAGGLFVPGKDRVVFRPPERKSLLGLDVLAIAKREG
SKVDGGFKTPRERVVSVVSSIEEEEQSESVNTDEKGSDASPAIQSHSRRRYREISGSETP
RTESTVTEEGQVDYMYGTRHSREHLRADVLATPSGSSHSVRSRTPKYDRDDRGSERRDDN
GRYEREDRGSERREYQDGNRSERQRYGNGKDYYRRREGGRYEQEYGGEYGRKQRRYEDSK
RTPGRSDWDDGRWEWEESPRRDSYSNTSRRHQPSPSPMLLGASPDARLVSPWLGGYTPHS
SGSAASPWDHISPSPAPICASGYSVKSSSLKHGARSHELTFSSESSQSFEDAEADNTDSA
EEHKYEISESMRIEMEYNSDRAWYDREEGNTMFDTTDDSSLFYGNDASYQKKEAELAKRL
VRKDGTKMSLAQSKKLSQRTADNAQWEDRQLLRSGAVRGTEVQTEFDDEEERKVILLVHD
TKPPFLDGRVVYTKQAEPIMPIKDPTSDMAIISRKGSTLVREIHEKQSMNKSRQRFWELA
GSKLGDILGVEKSAEQIDADTAAVGEDGEIDFKEDAKFAQHMKSGEAVSDFALSKTLSQQ
RQYLPIFSVRDELLQVIRENQVIVVVGETGSGKTTQLTQYLHEDGYTVNGIVGCTQPRRV
AAMSVAKRVSEEMETELGDKVGYAIRFEDVTGPNTVIKYMTDGVLLRETLRDSDLDKYRV
VVMDEAHERSLNTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRT
FPVNILYSKTPCEDYVEGAVKQAMTIHITSPPGDILIFMTGQDEIEAACYALAERMEQLI
SSSKKGVPKLLILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDT
GYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTENAYLNEMLPSPV
PEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTDLG
WKMVEFPLDPPLAKMLLMGEELGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFSI
PESDHLTLYNVYQQWKQHQYRGDWCGDHFLHVKGLRKAREVRSQLLEILKTLKVPLTSCW
PDTDNVRKAICSAYFHNSARLKGVGEYVNCRTGMPCHLHPSSALYGMGCTPDYLVYHELI
LTAKEYMQCATAVEPQWLAELGPMFFSVKDSDTSMLEHKKRQKEEKTAMEEEMENLRKTQ
AEEEKENKRKEKEKRSKQQQQVSTPGLHKGSSTYLRPKKLGL
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atggagggacgagcaaatgctgaacctattgacctggacaaaacaacagtgacgttggaa
cctgaggtgaacaacgctgggggattatttgttcctggaaaggatagggtcgtttttaga
cctccagagaggaaatctctcttagggttagatgtccttgctattgcaaaacgggaaggg
tctaaggttgatggtggattcaagaccccaagagaaagagttgtatctgttgtgtcatca
atagaggaagaggaacaatcagagtctgtaaatacagatgaaaaagggagtgatgcatcc
cctgctatacaaagtcactctaggaggcgatatcgtgaaatatctgggagtgagacaccg
cgtacagaaagtactgtaacagaggaaggacaagttgattatatgtacgggactcgtcac
tctagggaacatctgcgggcagatgttttggccacacctagtggaagttcacacagtgtt
aggtctcggactcctaagtatgacagggatgatcgtggtagtgagagaagagatgacaat
ggtaggtatgaaagggaggaccgtggtagcgagagaagagagtaccaagatggtaacagg
agtgagagacaaagatatggtaatggtaaggattattatcgtcgaagggaaggtggccga
tatgagcaagaatatggtggagaatatggaagaaagcagcgtagatatgaagattcaaag
aggacacctggcagatctgactgggatgacgggagatgggaatgggaggagtcaccacga
cgtgacagctactctaataccagtaggcgccatcaaccgtcaccatcacctatgctactt
ggtgcctcacctgatgcacgactagtttccccatggttgggtggctacacacctcattct
tctggttctgctgcttctccctgggatcacatctctccctctcctgccccaatatgtgct
tctggatactcagtcaaatcttcaagtttgaaacatggtgcgaggtcccatgaacttact
ttttcttcagaaagttcacaatcatttgaggatgcagaagcagataacactgattcggct
gaagaacacaaatatgagattagtgaaagcatgcgtatagagatggaatacaattctgac
cgtgcatggtacgatagagaagaaggaaacacaatgtttgatacgactgatgactcatcc
ttattttatggaaatgatgcttcatatcaaaagaaggaagcagagttggcaaaaaggctg
gttcgaaaagatggaactaagatgtctcttgctcagagcaaaaagttgtctcaacgcact
gctgataatgctcagtgggaggatcgtcaacttttgagatctggtgctgttagaggtacc
gaggtgcagactgagttcgacgatgaagaagagcggaaagttattcttcttgtacatgac
acaaagcctcctttcctggacggccgggttgtttatactaagcaagcagagcccataatg
cctataaaggatcccacatcagatatggccataatttcacgcaaagggtctactctggtt
agggaaatccatgagaagcaaagtatgaacaagtcacgtcagcgtttctgggagcttgca
ggttccaaacttggtgatattcttggtgttgagaaatcggcagagcagattgacgcagat
actgctgcagtaggtgaagatggtgaaattgatttcaaagaagatgccaagtttgcacaa
catatgaagagtggggaggctgtgagtgattttgcattgtcaaaaacactctcacagcaa
cgacaatatttgcccatattttctgtgcgggatgagttattgcaggtgattcgagaaaac
caggttattgttgttgttggagaaactggttctggaaagacaactcaactgacacagtat
cttcacgaagatgggtacacagtaaacggtatagtgggttgcacccaaccaaggcgtgtg
gcagccatgagcgttgcaaaaagagttagtgaagagatggagacggagcttggtgataaa
gttggctatgctattcgttttgaggatgtgactgggccaaataccgtaataaagtacatg
actgatggagtacttctgcgtgaaacgctcagagattctgaccttgacaagtaccgtgta
gttgtgatggacgaagcccatgaaaggtcactcaacacggatgtgctgtttgggattttg
aaaaaagtggtggcccaacgtcgtgattttaagctcattgtgacatctgcaactctaaat
gctcagaaattttcaaatttctttggaagcgtaccaatttttcacattcctgggagaaca
tttcctgttaatatcttgtacagcaaaaccccgtgcgaagattatgttgaaggtgcagtg
aagcaggccatgactattcacatcaccagccctccaggtgacattctcatcttcatgaca
ggccaagatgagattgaggcagcctgttatgcacttgctgagcgtatggaacaacttatt
tcatcctccaagaaaggggtgccaaaactcttgatactccccatatattcccagttgcct
gctgacttgcaagcaaagatattccaaaaagctgaggatggtgctcgcaagtgcattgta
gcaaccaacatcgctgagacttcgttgactgtggatggaatattttacgttattgacact
gggtatggtaaaatgaaagtatacaaccctcgaatgggtatggatgctcttcaagtgttt
cctgttagtcgtgctgctgcggatcagcgtgctgggcgtgctggtagaactgggcctgga
acatgctatcggttgtacacagagaatgcatatctaaatgaaatgctgcccagtcctgtg
ccagagattcagaggactaaccttggtaatgtggtgttgttgctcaagagtcttaaggtc
gagaacctgctagatttcgatttcatggacccacctccacaggacaacattctcaattct
atgtaccagctgtgggtcttaggcgctcttaacaatgtcgggggcttaactgatctgggc
tggaaaatggtggagttcccattggaccccccacttgctaagatgctattgatgggggaa
gagctaggatgcttggatgaggttttgacaattgtgtccatgctttcggtgccgtccgta
ttctttaggcctaaggatagggcagaagagagtgatgctgcacgtgagaaattctccatt
ccagagtccgatcacttgacactgtataatgtctaccagcagtggaaacaacatcagtat
cgtggggattggtgcggtgatcattttttgcatgttaaagggttacgaaaggctagagag
gtgaggtcccagctgctagagatcctgaagacactgaaagtccctttaacatcctgctgg
cctgatacagataatgtgagaaaagctatttgctctgcgtactttcacaattctgcaaga
ttgaagggagtcggggagtatgtgaattgccggaccgggatgccttgccatttacatccg
agcagtgctctatatggtatggggtgcactccggattatctcgtttatcatgaattgatt
ttgacggcaaaggagtacatgcagtgtgccacagcagtggaaccacagtggttggctgag
ttggggcctatgttcttctctgtaaaggattcggatacttcaatgttggagcacaagaag
agacaaaaggaggagaaaacagcgatggaggaggaaatggagaacctgaggaagactcaa
gcagaggaggagaaagaaaacaaacggaaggagaaagaaaagagatccaagcagcagcag
caagtctcaacgccgggtttgcacaagggctcttccacatatttgaggccaaagaaactt
ggcttgtaa
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integrated database retrieval system
