Prunus dulcis (almond): 117624040
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Entry
117624040 CDS
T07328
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117624040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdul03021
]
117624040
Transcription machinery [BR:
pdul03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
117624040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
117624040
NCBI-ProteinID:
XP_034211044
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All DBs
Position
4:534890..539977
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AA seq
537 aa
AA seq
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MSADLTLRSSCSGCGSTSELYGSNCKHMTLCLSCGKTMAENRAKCFDCGAIVTRLIREYN
VRASTVNDKNYFIGRFVTGLPSFSKKKNAENKWSLHKEGLQGRQLSDTLREKYKNKPWVL
EDETGQSQYQGHLEGAQTATYYLLMRQGKEFSAIPAGSWFNFNKVAQYKQLTLEEAEEKI
KNRKKTADGYERWMMKAANNGAAAFGEVERFDKDNGVTSGKGRKKAGDDDDGEGNVSDKG
EEDEEEELARKNRLNKKGGDDDDDDGARGADADLDDDDVEKGDDWEHEEIFTDDDEAVGN
NPEEREDLELEVPAPPEIKQDDEDEDEDDKEGGLSKSGKELKKLLGRTGGLDDSDAEDDD
DDDDDMDDDIGFPQAAAPKQKDAPKEEPSDNSPSKPVPSGSARGTPSTAKSAKGKRKLSA
DDAKTSNNAPPKKVKSENEQKVSTKEEPASASKSSTPSKGTPSVKVEPTSSSGPVTEEEI
RTVLVQRTPVTTQDLVARFKARLRLQEDKSAFAAILRKISKIQKTTNGSSYVVLRDK
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgatttgacgctgagatcgtcgtgcagtggatgtggatcgacgtcggaatta
tacggaagcaattgcaagcacatgactctgtgcctgtcctgtggcaaaaccatggctgag
aaccgcgccaaatgctttgactgtggagccatcgtcactcgcttaattcgagagtataat
gttcgtgctagtactgtaaacgacaagaactacttcattggtagatttgtgactgggttg
ccaagtttttcgaagaagaaaaatgctgaaaataagtggtctcttcacaaggaaggacta
caaggacgccaactttctgataccttgcgggagaagtacaagaacaaaccttgggtcttg
gaggatgaaactggccagtctcagtaccagggtcatcttgaaggtgcacaaactgcaaca
tactacctactaatgaggcaaggaaaggagttttctgctattcctgctggttcttggttc
aacttcaacaaggttgcacaatacaagcaacttacattggaggaagctgaagagaagatt
aaaaataggaaaaagaccgcagatggatatgaaagatggatgatgaaagctgcaaataat
ggagctgctgcatttggtgaggtggagaggtttgacaaggataatggtgtgacgagtggg
aagggacggaaaaaagctggtgatgatgatgatggtgaaggaaatgtctcagataaaggt
gaggaggatgaggaagaagagttagcccggaaaaatagactgaacaaaaaaggtggtgat
gatgatgatgatgatggtgcaaggggagctgatgctgacttggatgatgatgatgtcgag
aagggagatgattgggagcatgaagaaattttcactgatgatgatgaagctgttggcaat
aatcctgaggaaagggaagatttggaacttgaggttccagctcctccagaaattaagcag
gatgatgaggacgaggatgaagatgacaaggagggcggactgagcaaatctggaaaagag
ttgaagaagctacttgggcgaactggtgggctggatgattcagatgcagaagatgacgac
gatgacgatgatgatatggatgatgatattggctttcctcaagcagcggcaccaaagcaa
aaggatgcacccaaagaggaaccatctgacaacagtccctcaaaaccagtgccttctggg
tctgctcgaggaactccatctaccgccaagtccgcaaagggaaagagaaaattaagtgct
gatgatgctaagacatctaacaatgcacctcccaagaaggtgaaaagtgaaaatgaacaa
aaagtttccaccaaagaggagcctgcatctgcttctaaaagtagtacaccttcaaaaggt
actccatcggtaaaagtggagccaacatcatcaagtggacccgtcactgaggaagaaatc
aggactgttttggtgcaaagaacaccagtcaccacacaagatcttgttgctagatttaag
gcaagactcagattgcaagaggacaagtcagcttttgctgcgatcctgaggaaaatttct
aagatacagaagaccaccaacggatccagctatgttgtgctgagagataaatga
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